Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HXS60_RS01395 | Genome accession | NZ_AP023042 |
| Coordinates | 269163..269426 (+) | Length | 87 a.a. |
| NCBI ID | WP_034375715.1 | Uniprot ID | - |
| Organism | Helicobacter suis strain NHP19-4004 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 264163..274426
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS60_RS01370 (NHP194004_02810) | - | 264372..265772 (-) | 1401 | WP_006564105.1 | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | - |
| HXS60_RS01375 (NHP194004_02820) | - | 265912..267087 (+) | 1176 | WP_064430215.1 | site-specific DNA-methyltransferase | - |
| HXS60_RS01380 (NHP194004_02830) | - | 267074..267940 (+) | 867 | WP_006565094.1 | CfrBI family restriction endonuclease | - |
| HXS60_RS01385 (NHP194004_02840) | - | 268110..268880 (+) | 771 | WP_034375711.1 | hypothetical protein | - |
| HXS60_RS01390 (NHP194004_02850) | comB2 | 268913..269152 (+) | 240 | WP_050780158.1 | TrbC/VirB2 family protein | Machinery gene |
| HXS60_RS01395 (NHP194004_02860) | comB3 | 269163..269426 (+) | 264 | WP_034375715.1 | hypothetical protein | Machinery gene |
| HXS60_RS01400 (NHP194004_02870) | - | 269419..269766 (+) | 348 | WP_143440944.1 | hypothetical protein | - |
| HXS60_RS01405 (NHP194004_02880) | comB4 | 269779..272214 (+) | 2436 | WP_176486634.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HXS60_RS09665 (NHP194004_02890) | - | 272219..272428 (+) | 210 | WP_141556969.1 | hypothetical protein | - |
| HXS60_RS01415 (NHP194004_02900) | - | 272438..273529 (+) | 1092 | WP_176486635.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9910.98 Da Isoelectric Point: 8.9498
>NTDB_id=80785 HXS60_RS01395 WP_034375715.1 269163..269426(+) (comB3) [Helicobacter suis strain NHP19-4004]
MQVVQVSVPNLREISSKEKFLWLNAKSFLICLLVPFVLLPTIGVLYALLLYGVLLLVFSILEFFDEDISDILVARSKIKT
KSTKFYA
MQVVQVSVPNLREISSKEKFLWLNAKSFLICLLVPFVLLPTIGVLYALLLYGVLLLVFSILEFFDEDISDILVARSKIKT
KSTKFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=80785 HXS60_RS01395 WP_034375715.1 269163..269426(+) (comB3) [Helicobacter suis strain NHP19-4004]
ATGCAAGTTGTGCAGGTGAGTGTGCCTAATCTAAGAGAAATCTCTAGCAAAGAAAAATTCTTATGGCTCAATGCCAAAAG
TTTTTTAATCTGCTTGCTTGTGCCCTTCGTGTTACTACCCACTATTGGAGTCTTATATGCCTTGCTGCTCTATGGTGTGC
TTTTATTAGTGTTTAGCATTTTAGAATTTTTTGATGAAGACATTAGCGATATTCTAGTTGCGCGCTCTAAAATCAAAACT
AAGAGCACAAAATTTTATGCGTGA
ATGCAAGTTGTGCAGGTGAGTGTGCCTAATCTAAGAGAAATCTCTAGCAAAGAAAAATTCTTATGGCTCAATGCCAAAAG
TTTTTTAATCTGCTTGCTTGTGCCCTTCGTGTTACTACCCACTATTGGAGTCTTATATGCCTTGCTGCTCTATGGTGTGC
TTTTATTAGTGTTTAGCATTTTAGAATTTTTTGATGAAGACATTAGCGATATTCTAGTTGCGCGCTCTAAAATCAAAACT
AAGAGCACAAAATTTTATGCGTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
63.218 |
100 |
0.632 |