Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P3X63_RS19700 Genome accession   NZ_CP120679
Coordinates   3791859..3792548 (-) Length   229 a.a.
NCBI ID   WP_026588947.1    Uniprot ID   A0A6I7F309
Organism   Bacillus sp. HSf4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3786859..3797548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS19665 (P3X63_19665) - 3787019..3787498 (-) 480 WP_026588939.1 flagellar protein FlgN -
  P3X63_RS19670 (P3X63_19670) flgM 3787518..3787784 (-) 267 WP_026588940.1 flagellar biosynthesis anti-sigma factor FlgM -
  P3X63_RS19675 (P3X63_19675) - 3787865..3788284 (-) 420 WP_277691720.1 TIGR03826 family flagellar region protein -
  P3X63_RS19680 (P3X63_19680) comFC 3788343..3789077 (-) 735 WP_277691721.1 ComF family protein Machinery gene
  P3X63_RS19685 (P3X63_19685) - 3789034..3789318 (-) 285 WP_026588943.1 competence protein ComFB -
  P3X63_RS19690 (P3X63_19690) comFA 3789375..3790763 (-) 1389 WP_277692947.1 DEAD/DEAH box helicase Machinery gene
  P3X63_RS19695 (P3X63_19695) - 3790897..3791739 (-) 843 WP_277691722.1 DegV family protein -
  P3X63_RS19700 (P3X63_19700) degU 3791859..3792548 (-) 690 WP_026588947.1 two-component system response regulator DegU Regulator
  P3X63_RS19705 (P3X63_19705) degS 3792630..3793787 (-) 1158 WP_026588948.1 histidine kinase Regulator
  P3X63_RS19710 (P3X63_19710) - 3794009..3794647 (+) 639 WP_026588949.1 YigZ family protein -
  P3X63_RS19715 (P3X63_19715) - 3794661..3795737 (+) 1077 WP_026588950.1 LCP family protein -
  P3X63_RS19720 (P3X63_19720) - 3795893..3796117 (+) 225 WP_277691723.1 hypothetical protein -
  P3X63_RS19725 (P3X63_19725) - 3796108..3796653 (+) 546 WP_277692948.1 DUF1668 domain-containing protein -
  P3X63_RS19730 (P3X63_19730) - 3796641..3796754 (+) 114 Protein_3837 hypothetical protein -
  P3X63_RS19735 (P3X63_19735) - 3796770..3797204 (+) 435 WP_277692949.1 kelch repeat-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25826.51 Da        Isoelectric Point: 5.9436

>NTDB_id=807694 P3X63_RS19700 WP_026588947.1 3791859..3792548(-) (degU) [Bacillus sp. HSf4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=807694 P3X63_RS19700 WP_026588947.1 3791859..3792548(-) (degU) [Bacillus sp. HSf4]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTAAAACGGATTTTGGACTTCGAACC
TACCTTTGAGGTAGTAGCCGAAGGAGACGACGGTGATGAAGCAGCTCGCATTGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAACATGCCGAATGTAAACGGAGTGGAAGCGACAAAACAGCTGGTCGATCTTTACCCGGAATCAAAGGTT
ATTATTTTATCCATTCACGACGATGAAAACTATGTAACACACGCATTAAAAACAGGAGCACGCGGCTATCTTCTGAAAGA
AATGGATGCCGACACACTGATTGAAGCCGTAAAAGTAGTGGCTGAAGGCGGATCTTACCTTCACCCTAAGGTTACGCACA
ATCTTGTCAACGAATTCCGGCGTTTGGCAACAAGCGGGGTATCAGCGCATGCCCAGCATGAAGTGTATCCGGAAATTCGC
AGACCGCTTCACATTTTGACGAGAAGGGAATGCGAGGTTTTACAGATGCTCGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTATTTATCAGCGAAAAGACGGTTAAAAACCATGTCAGCAACATCCTGCAGAAAATGAATGTAAACGACAGAA
CTCAAGCTGTCGTCGTGGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F309

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.127

100

0.991