Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P3X63_RS19680 Genome accession   NZ_CP120679
Coordinates   3788343..3789077 (-) Length   244 a.a.
NCBI ID   WP_277691721.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3783343..3794077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS19645 (P3X63_19645) fliW 3783490..3783921 (-) 432 WP_277691718.1 flagellar assembly protein FliW -
  P3X63_RS19650 (P3X63_19650) - 3783942..3784508 (-) 567 WP_277691719.1 DUF6470 family protein -
  P3X63_RS19655 (P3X63_19655) flgL 3784558..3785469 (-) 912 WP_026588937.1 flagellar hook-associated protein FlgL -
  P3X63_RS19660 (P3X63_19660) flgK 3785480..3787003 (-) 1524 WP_026588938.1 flagellar hook-associated protein FlgK -
  P3X63_RS19665 (P3X63_19665) - 3787019..3787498 (-) 480 WP_026588939.1 flagellar protein FlgN -
  P3X63_RS19670 (P3X63_19670) flgM 3787518..3787784 (-) 267 WP_026588940.1 flagellar biosynthesis anti-sigma factor FlgM -
  P3X63_RS19675 (P3X63_19675) - 3787865..3788284 (-) 420 WP_277691720.1 TIGR03826 family flagellar region protein -
  P3X63_RS19680 (P3X63_19680) comFC 3788343..3789077 (-) 735 WP_277691721.1 ComF family protein Machinery gene
  P3X63_RS19685 (P3X63_19685) - 3789034..3789318 (-) 285 WP_026588943.1 competence protein ComFB -
  P3X63_RS19690 (P3X63_19690) comFA 3789375..3790763 (-) 1389 WP_277692947.1 DEAD/DEAH box helicase Machinery gene
  P3X63_RS19695 (P3X63_19695) - 3790897..3791739 (-) 843 WP_277691722.1 DegV family protein -
  P3X63_RS19700 (P3X63_19700) degU 3791859..3792548 (-) 690 WP_026588947.1 two-component system response regulator DegU Regulator
  P3X63_RS19705 (P3X63_19705) degS 3792630..3793787 (-) 1158 WP_026588948.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 28261.83 Da        Isoelectric Point: 9.7309

>NTDB_id=807692 P3X63_RS19680 WP_277691721.1 3788343..3789077(-) (comFC) [Bacillus sp. HSf4]
MKIRIAKINRKEEDELNCLICEAPLSHSLSWRVLFFLRTEEKICRECKESFNKIEGTVCRKCGRPQDSERLCRDCLKWEA
DPKTRSLLKQNRSVYLYNSFMKDALARFKFRGDAELVYAFAPSFIRAFQTYCRHSHPILVPIPLSEERKIERGFNQAELL
ASLLKRPVIHPLIRTENEKQSKKSRAERLKEKNVFQTDKGSVKGLHVMLIDDLYTTGATLHHAARCLKVDGGADLVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=807692 P3X63_RS19680 WP_277691721.1 3788343..3789077(-) (comFC) [Bacillus sp. HSf4]
ATGAAAATCCGTATTGCGAAAATCAACAGAAAGGAAGAGGATGAGCTGAATTGTTTAATCTGTGAAGCGCCTCTTTCACA
TTCTCTTTCATGGCGTGTCTTGTTCTTTTTGCGAACGGAAGAAAAGATATGTCGGGAATGTAAAGAGAGCTTTAACAAGA
TCGAAGGAACCGTATGCCGCAAATGCGGCAGGCCGCAGGACAGTGAAAGGCTCTGCCGGGATTGTTTAAAATGGGAAGCC
GATCCGAAAACACGCTCACTTCTCAAGCAAAACCGCTCCGTTTATCTGTACAACTCTTTTATGAAAGACGCGCTCGCCCG
CTTTAAGTTCAGAGGCGATGCCGAACTTGTCTACGCTTTTGCCCCATCATTTATCCGCGCCTTTCAAACATACTGCCGCC
ATTCTCATCCCATACTCGTGCCGATTCCTTTAAGCGAGGAACGCAAAATCGAGAGAGGCTTTAATCAGGCGGAGCTGCTT
GCTTCCTTATTAAAAAGACCCGTCATCCATCCATTGATCAGAACGGAAAATGAAAAACAATCCAAGAAAAGCAGAGCGGA
GCGCCTTAAAGAAAAAAACGTCTTTCAAACGGACAAAGGATCTGTAAAGGGTCTCCATGTCATGCTGATTGACGATTTGT
ATACGACCGGCGCAACTCTCCACCATGCAGCCCGGTGCCTGAAGGTTGACGGCGGAGCCGATTTGGTATCATCTTACACA
TTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.913

94.262

0.508