Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P3X63_RS19690 Genome accession   NZ_CP120679
Coordinates   3789375..3790763 (-) Length   462 a.a.
NCBI ID   WP_277692947.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3784375..3795763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS19655 (P3X63_19655) flgL 3784558..3785469 (-) 912 WP_026588937.1 flagellar hook-associated protein FlgL -
  P3X63_RS19660 (P3X63_19660) flgK 3785480..3787003 (-) 1524 WP_026588938.1 flagellar hook-associated protein FlgK -
  P3X63_RS19665 (P3X63_19665) - 3787019..3787498 (-) 480 WP_026588939.1 flagellar protein FlgN -
  P3X63_RS19670 (P3X63_19670) flgM 3787518..3787784 (-) 267 WP_026588940.1 flagellar biosynthesis anti-sigma factor FlgM -
  P3X63_RS19675 (P3X63_19675) - 3787865..3788284 (-) 420 WP_277691720.1 TIGR03826 family flagellar region protein -
  P3X63_RS19680 (P3X63_19680) comFC 3788343..3789077 (-) 735 WP_277691721.1 ComF family protein Machinery gene
  P3X63_RS19685 (P3X63_19685) - 3789034..3789318 (-) 285 WP_026588943.1 competence protein ComFB -
  P3X63_RS19690 (P3X63_19690) comFA 3789375..3790763 (-) 1389 WP_277692947.1 DEAD/DEAH box helicase Machinery gene
  P3X63_RS19695 (P3X63_19695) - 3790897..3791739 (-) 843 WP_277691722.1 DegV family protein -
  P3X63_RS19700 (P3X63_19700) degU 3791859..3792548 (-) 690 WP_026588947.1 two-component system response regulator DegU Regulator
  P3X63_RS19705 (P3X63_19705) degS 3792630..3793787 (-) 1158 WP_026588948.1 histidine kinase Regulator
  P3X63_RS19710 (P3X63_19710) - 3794009..3794647 (+) 639 WP_026588949.1 YigZ family protein -
  P3X63_RS19715 (P3X63_19715) - 3794661..3795737 (+) 1077 WP_026588950.1 LCP family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51726.51 Da        Isoelectric Point: 9.8948

>NTDB_id=807693 P3X63_RS19690 WP_277692947.1 3789375..3790763(-) (comFA) [Bacillus sp. HSf4]
MEHEASAYTGNLQALLEARQLLKSELPFPDSAVEWHIQNGLIKAETPIQKTAKGLICMRCGQRDPSRFAQYPCLICQKDC
VYCRSCVMMGRVSECTPLLTWTGGGSSAWPPVSMTWKGVLSAGQEKAARMIVDAIRQKEQLLVWAVCGSGKTEILFQGIE
FALNKGLRVCIATPRTDVVLELAPRLQTAFKGLDIAVLYGGSPDRGKLAPLVISTTHQLLRYKKAFDVIIIDEVDAFPFS
LDQKLQYAVQKARKPQSARIYLTATPSEEMKRSAENGKLRTVQILSRYHRKPLSEPVMRWCGNWKRGLDKGKLPPVIMQW
LFKHKELQQPVFLFVPSIPILKSVSFLLKKAQFQAESVYADDPGRNEKVGLFREEKLDVLVTTTILERGVTVRKVQVGVL
GAESAVFSESALVQIAGRAGRHPQFPWGDVCFFHFGKTKSLNAACRHIRDMNKLAKKEILVD

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=807693 P3X63_RS19690 WP_277692947.1 3789375..3790763(-) (comFA) [Bacillus sp. HSf4]
ATCGAACATGAGGCATCCGCATATACCGGCAACCTGCAGGCTCTTCTGGAGGCGCGCCAGCTTCTGAAAAGCGAGCTTCC
CTTTCCGGACAGCGCCGTAGAATGGCATATACAAAACGGACTCATCAAGGCTGAAACACCGATTCAAAAAACGGCAAAGG
GCTTGATCTGCATGAGGTGCGGCCAGCGCGATCCGTCACGTTTTGCGCAATATCCTTGTTTAATATGCCAAAAAGACTGT
GTATACTGCCGTTCCTGCGTAATGATGGGAAGGGTGAGCGAATGCACGCCGCTTTTGACATGGACAGGCGGCGGTTCTTC
GGCATGGCCGCCGGTCAGCATGACCTGGAAAGGTGTTCTTTCGGCCGGACAGGAAAAAGCGGCGCGAATGATTGTCGATG
CCATCCGCCAAAAAGAGCAGCTTTTAGTCTGGGCGGTTTGCGGTTCAGGCAAAACAGAAATACTTTTTCAAGGAATTGAG
TTTGCGCTAAACAAAGGTTTAAGGGTATGCATCGCCACGCCGAGAACGGATGTAGTGCTGGAGCTCGCCCCGCGGCTGCA
GACCGCATTTAAAGGATTGGACATCGCCGTATTATATGGCGGAAGTCCGGACAGAGGGAAGCTTGCACCGCTTGTCATCT
CAACAACCCATCAGCTTCTCCGCTATAAAAAAGCATTTGATGTGATCATCATCGATGAAGTCGACGCTTTTCCATTTTCT
CTTGACCAAAAACTGCAATATGCTGTTCAAAAAGCGCGAAAACCGCAAAGCGCCCGCATCTATTTAACCGCCACCCCATC
GGAAGAAATGAAACGAAGCGCTGAAAATGGCAAGCTCCGCACTGTGCAGATACTCTCCAGATATCACCGCAAGCCATTGT
CTGAGCCTGTTATGAGGTGGTGCGGGAACTGGAAGAGAGGACTCGACAAGGGAAAACTGCCGCCCGTAATAATGCAATGG
CTTTTCAAGCATAAAGAGCTGCAGCAGCCGGTTTTTTTATTTGTTCCCTCGATTCCAATTCTCAAATCAGTGTCATTCCT
ATTAAAAAAAGCGCAATTCCAAGCCGAGAGCGTTTATGCAGACGACCCCGGCAGAAATGAGAAAGTCGGGCTGTTCAGAG
AAGAAAAGCTTGATGTACTGGTGACGACAACCATTTTGGAAAGGGGAGTGACGGTCAGAAAAGTCCAGGTCGGGGTGCTC
GGTGCGGAGTCGGCCGTCTTTAGCGAAAGCGCGCTTGTCCAAATCGCCGGCAGAGCCGGCAGACACCCGCAGTTTCCTTG
GGGAGACGTCTGTTTTTTTCACTTTGGCAAAACAAAGAGCTTGAATGCGGCCTGCCGCCATATTCGCGATATGAATAAAT
TGGCTAAAAAGGAAATATTGGTTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(319-422)

Type III restriction enzyme, res subunit (ResIII)

(120-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

58.628

97.835

0.574