Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   P3X63_RS13600 Genome accession   NZ_CP120679
Coordinates   2632133..2632426 (-) Length   97 a.a.
NCBI ID   WP_026587852.1    Uniprot ID   A0A6I7FAK6
Organism   Bacillus sp. HSf4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2627133..2637426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS13555 (P3X63_13555) - 2627275..2628069 (-) 795 WP_277691017.1 TasA family protein -
  P3X63_RS13560 (P3X63_13560) - 2628138..2628722 (-) 585 WP_026587844.1 signal peptidase I -
  P3X63_RS13565 (P3X63_13565) tapA 2628719..2629447 (-) 729 WP_026587845.1 amyloid fiber anchoring/assembly protein TapA -
  P3X63_RS13570 (P3X63_13570) - 2629717..2630034 (+) 318 WP_026587846.1 YqzG/YhdC family protein -
  P3X63_RS13575 (P3X63_13575) - 2630326..2630511 (-) 186 WP_277691018.1 YqzE family protein -
  P3X63_RS13580 (P3X63_13580) comGG 2630583..2630948 (-) 366 WP_026587848.1 competence type IV pilus minor pilin ComGG -
  P3X63_RS13585 (P3X63_13585) comGF 2630962..2631450 (-) 489 WP_277691019.1 competence type IV pilus minor pilin ComGF -
  P3X63_RS13590 (P3X63_13590) comGE 2631359..2631706 (-) 348 WP_277691020.1 competence type IV pilus minor pilin ComGE -
  P3X63_RS13595 (P3X63_13595) comGD 2631690..2632133 (-) 444 WP_236251143.1 competence type IV pilus minor pilin ComGD -
  P3X63_RS13600 (P3X63_13600) comGC 2632133..2632426 (-) 294 WP_026587852.1 competence type IV pilus major pilin ComGC Machinery gene
  P3X63_RS13605 (P3X63_13605) comGB 2632441..2633478 (-) 1038 WP_277691021.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3X63_RS13610 (P3X63_13610) comGA 2633465..2634532 (-) 1068 WP_277691022.1 competence type IV pilus ATPase ComGA Machinery gene
  P3X63_RS13615 (P3X63_13615) - 2634702..2635553 (-) 852 WP_277691023.1 STAS domain-containing protein -
  P3X63_RS13625 (P3X63_13625) - 2635804..2636181 (-) 378 WP_035428189.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  P3X63_RS13630 (P3X63_13630) - 2636395..2636640 (+) 246 WP_026587856.1 DUF2626 domain-containing protein -
  P3X63_RS13635 (P3X63_13635) - 2636682..2637320 (-) 639 WP_026587857.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10701.55 Da        Isoelectric Point: 8.5074

>NTDB_id=807669 P3X63_RS13600 WP_026587852.1 2632133..2632426(-) (comGC) [Bacillus sp. HSf4]
MNEKGFTLIEMLVVMLVVSILLLITIPNVTKHNQSIQKKGCEGLKNMIQAQITAYQMDHDGKTPSLSELESEGYVKKNVR
CPNGKAIVISNGKVQSD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=807669 P3X63_RS13600 WP_026587852.1 2632133..2632426(-) (comGC) [Bacillus sp. HSf4]
TTGAATGAAAAGGGATTTACTTTGATCGAAATGCTCGTCGTCATGCTCGTTGTATCCATTCTGCTTTTGATCACAATCCC
CAATGTCACAAAACATAATCAAAGCATCCAAAAGAAGGGCTGTGAAGGGCTGAAAAATATGATTCAAGCGCAAATCACAG
CTTACCAGATGGACCATGACGGCAAGACGCCAAGCTTGAGCGAGCTTGAATCAGAAGGATATGTTAAAAAGAATGTAAGA
TGTCCAAACGGGAAGGCGATTGTAATTTCCAACGGCAAGGTGCAGTCTGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7FAK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

70.526

97.938

0.691
  comGC Staphylococcus aureus MW2

40.217

94.845

0.381
  comGC Staphylococcus aureus N315

40.217

94.845

0.381