Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P3X63_RS13610 Genome accession   NZ_CP120679
Coordinates   2633465..2634532 (-) Length   355 a.a.
NCBI ID   WP_277691022.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2628465..2639532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS13565 (P3X63_13565) tapA 2628719..2629447 (-) 729 WP_026587845.1 amyloid fiber anchoring/assembly protein TapA -
  P3X63_RS13570 (P3X63_13570) - 2629717..2630034 (+) 318 WP_026587846.1 YqzG/YhdC family protein -
  P3X63_RS13575 (P3X63_13575) - 2630326..2630511 (-) 186 WP_277691018.1 YqzE family protein -
  P3X63_RS13580 (P3X63_13580) comGG 2630583..2630948 (-) 366 WP_026587848.1 competence type IV pilus minor pilin ComGG -
  P3X63_RS13585 (P3X63_13585) comGF 2630962..2631450 (-) 489 WP_277691019.1 competence type IV pilus minor pilin ComGF -
  P3X63_RS13590 (P3X63_13590) comGE 2631359..2631706 (-) 348 WP_277691020.1 competence type IV pilus minor pilin ComGE -
  P3X63_RS13595 (P3X63_13595) comGD 2631690..2632133 (-) 444 WP_236251143.1 competence type IV pilus minor pilin ComGD -
  P3X63_RS13600 (P3X63_13600) comGC 2632133..2632426 (-) 294 WP_026587852.1 competence type IV pilus major pilin ComGC Machinery gene
  P3X63_RS13605 (P3X63_13605) comGB 2632441..2633478 (-) 1038 WP_277691021.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3X63_RS13610 (P3X63_13610) comGA 2633465..2634532 (-) 1068 WP_277691022.1 competence type IV pilus ATPase ComGA Machinery gene
  P3X63_RS13615 (P3X63_13615) - 2634702..2635553 (-) 852 WP_277691023.1 STAS domain-containing protein -
  P3X63_RS13625 (P3X63_13625) - 2635804..2636181 (-) 378 WP_035428189.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  P3X63_RS13630 (P3X63_13630) - 2636395..2636640 (+) 246 WP_026587856.1 DUF2626 domain-containing protein -
  P3X63_RS13635 (P3X63_13635) - 2636682..2637320 (-) 639 WP_026587857.1 MBL fold metallo-hydrolase -
  P3X63_RS13640 (P3X63_13640) - 2637479..2637652 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  P3X63_RS13645 (P3X63_13645) - 2637728..2638039 (-) 312 WP_026587858.1 MTH1187 family thiamine-binding protein -
  P3X63_RS13650 (P3X63_13650) - 2638056..2639165 (-) 1110 WP_077736427.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39973.44 Da        Isoelectric Point: 9.1192

>NTDB_id=807671 P3X63_RS13610 WP_277691022.1 2633465..2634532(-) (comGA) [Bacillus sp. HSf4]
MQTTESFSGKLFEEAFMMKASDIHIVPGEKDALIRFRIDGELFRKHRLTKNECSRLISHFKFLSSMDIGERRQPQSGSLT
LHMKGEPVHLRMSTLPTINEESLVIRVLPQTSKQPLKKLSLFPSATFKLLSFLKHAHGLMIFTGPTGSGKSTTLYSLIEY
AKRHFNRNIITLEDPVESRSENILQVQVNEKAGMSYSAGLKAVLRHDPDMIILGEIRDAETAETAVRAALTGHLVLTSMH
AKNAKGAIYRLLEFGIDITEIEQTLIAVSAQRLVGLVCPFCGDRCSLFCRLSRPVRRASIFELLYGKRLHQCVKEAKGEY
AVVRDETLGMLIRKGIALGYLPAEAYERWVDHESE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=807671 P3X63_RS13610 WP_277691022.1 2633465..2634532(-) (comGA) [Bacillus sp. HSf4]
TTGCAGACGACTGAATCATTTAGCGGGAAATTATTCGAAGAGGCATTCATGATGAAAGCTTCGGATATCCATATTGTTCC
GGGAGAAAAAGACGCGCTGATACGCTTCAGAATTGATGGTGAGCTGTTTAGAAAGCATCGATTAACGAAAAATGAATGCT
CGAGGCTTATTTCTCATTTTAAATTTTTGTCTTCCATGGATATCGGTGAACGCAGGCAGCCGCAAAGCGGGTCCTTGACC
TTGCACATGAAGGGGGAGCCCGTTCATTTAAGAATGTCCACATTGCCAACCATAAATGAAGAAAGCCTGGTGATCCGCGT
TTTGCCGCAGACAAGCAAACAGCCGCTCAAAAAGCTTTCTTTGTTTCCAAGCGCAACATTCAAGCTCCTGTCTTTCCTGA
AACATGCTCACGGTTTAATGATCTTTACCGGTCCGACCGGATCAGGCAAGTCGACAACACTTTATTCGCTGATCGAATAT
GCCAAACGCCACTTTAACCGCAACATTATTACATTGGAGGATCCGGTTGAATCGAGAAGCGAAAATATTTTGCAAGTACA
GGTGAATGAAAAAGCGGGAATGTCGTATTCGGCCGGTTTAAAGGCGGTTCTCCGCCATGATCCGGACATGATCATACTGG
GGGAAATCCGTGATGCCGAAACAGCCGAAACCGCAGTCAGAGCTGCGCTGACAGGACATCTCGTCCTCACGAGCATGCAT
GCGAAAAATGCAAAGGGAGCGATTTACAGGCTTCTTGAGTTTGGTATTGACATAACAGAAATTGAACAGACGCTCATCGC
AGTAAGCGCTCAGCGCCTGGTAGGGCTTGTCTGCCCGTTTTGCGGCGACAGATGCTCTTTGTTTTGCCGATTGTCCAGGC
CTGTGAGAAGAGCAAGCATTTTTGAGCTGCTTTATGGGAAAAGGCTTCACCAATGTGTAAAAGAAGCAAAAGGTGAATAT
GCCGTTGTCCGCGATGAAACTTTAGGCATGCTGATTCGAAAAGGAATTGCGCTCGGCTATCTGCCGGCGGAAGCCTATGA
GCGCTGGGTTGATCATGAGTCGGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

69.382

100

0.696