Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HXS57_RS00840 Genome accession   NZ_AP023039
Coordinates   151212..152021 (-) Length   269 a.a.
NCBI ID   WP_006563892.1    Uniprot ID   -
Organism   Helicobacter suis strain NHP19-4003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 146212..157021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS57_RS00815 (NHP194003_01640) - 146694..147974 (+) 1281 WP_176485784.1 ArsS family sensor histidine kinase -
  HXS57_RS00820 (NHP194003_01650) - 147971..149152 (+) 1182 WP_104685875.1 amidophosphoribosyltransferase -
  HXS57_RS00825 (NHP194003_01660) hemB 149145..150116 (+) 972 WP_040499055.1 porphobilinogen synthase -
  HXS57_RS00830 (NHP194003_01670) - 150116..150838 (+) 723 WP_006563894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HXS57_RS00835 (NHP194003_01680) dprB 150820..151215 (-) 396 WP_006563893.1 Holliday junction resolvase RuvX Machinery gene
  HXS57_RS00840 (NHP194003_01690) dprA 151212..152021 (-) 810 WP_006563892.1 DNA-processing protein DprA Machinery gene
  HXS57_RS00845 (NHP194003_01700) minE 152009..152266 (-) 258 WP_034376430.1 cell division topological specificity factor MinE -
  HXS57_RS00850 (NHP194003_01710) minD 152263..153063 (-) 801 WP_006563890.1 septum site-determining protein MinD -
  HXS57_RS00855 (NHP194003_01720) ilvC 153072..154052 (-) 981 WP_006565235.1 ketol-acid reductoisomerase -
  HXS57_RS00860 (NHP194003_01730) - 154149..156773 (+) 2625 WP_176485785.1 phosphoenolpyruvate carboxylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29789.60 Da        Isoelectric Point: 9.1603

>NTDB_id=80764 HXS57_RS00840 WP_006563892.1 151212..152021(-) (dprA) [Helicobacter suis strain NHP19-4003]
MPVLSHFNYTLLNALPTVLGHLKNPPQNLYYVGRLELFNAPFKIALVGTRKPSVYTQQLTAKLAKGIMQMGGVVVSGGAF
GVDIIAQKNALPHTIMISPCSLDLIYPPSNHATITRIAKEGLLVSEYQENFQPYRFSFLERNRLVVALSDLVIIPEASHN
SGSMASAHLALAQKKPLFVLPQRLYESEGTLSLLAQNKAQAIYDIDAFLDQLAQKFNTKPPKEKAQNAFLKFCQSAPSFE
EAYAQFGDFLLEQELLGVVKRENGRVVLL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=80764 HXS57_RS00840 WP_006563892.1 151212..152021(-) (dprA) [Helicobacter suis strain NHP19-4003]
TTGCCCGTATTAAGCCATTTTAACTACACCTTACTTAACGCGCTACCCACAGTCTTAGGGCATCTTAAAAATCCACCGCA
AAATTTATACTATGTGGGTCGCTTAGAGCTTTTCAACGCTCCTTTTAAAATCGCGCTAGTAGGTACGCGTAAACCCAGTG
TCTACACCCAGCAACTTACAGCTAAATTAGCAAAGGGCATTATGCAAATGGGGGGAGTGGTGGTCAGTGGTGGGGCTTTT
GGGGTAGATATTATTGCCCAAAAAAATGCATTACCCCATACAATTATGATCTCTCCATGTAGTTTAGATTTAATTTATCC
TCCAAGTAATCATGCAACCATTACGCGCATTGCTAAAGAAGGCTTACTTGTGAGTGAATACCAAGAGAATTTTCAACCTT
ATCGTTTTTCATTTTTAGAACGAAACCGTTTAGTGGTGGCTTTAAGCGATTTGGTGATTATTCCAGAAGCAAGCCATAAT
AGCGGCTCTATGGCAAGCGCTCATTTAGCTCTAGCCCAAAAAAAGCCTCTCTTTGTGTTACCCCAGCGGCTTTATGAGAG
TGAGGGAACTCTTTCTCTCTTAGCGCAAAATAAAGCCCAAGCGATTTATGATATAGATGCCTTTTTAGATCAATTAGCCC
AAAAATTTAACACAAAGCCCCCTAAAGAAAAAGCACAAAATGCTTTTTTGAAATTCTGCCAGAGTGCGCCTAGTTTTGAG
GAGGCGTACGCTCAGTTTGGGGATTTTCTCTTAGAACAAGAACTTTTAGGGGTGGTTAAACGAGAAAATGGGCGGGTTGT
GTTGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(15-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

54.167

98.141

0.532
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.918

86.617

0.372

Multiple sequence alignment