Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   P3L36_RS02285 Genome accession   NZ_CP120654
Coordinates   391217..392506 (+) Length   429 a.a.
NCBI ID   WP_000432955.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain Guangzhou-SAG036     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386217..397506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L36_RS02265 (P3L36_02265) - 387524..388192 (+) 669 WP_000394890.1 fructose-6-phosphate aldolase -
  P3L36_RS02270 (P3L36_02270) - 388260..389348 (+) 1089 WP_000862112.1 glycerol dehydrogenase -
  P3L36_RS02275 (P3L36_02275) cysK 389500..390426 (-) 927 WP_000036952.1 cysteine synthase A -
  P3L36_RS02280 (P3L36_02280) - 390517..391161 (-) 645 WP_001108150.1 YigZ family protein -
  P3L36_RS02285 (P3L36_02285) comFA/cflA 391217..392506 (+) 1290 WP_000432955.1 DEAD/DEAH box helicase Machinery gene
  P3L36_RS02290 (P3L36_02290) - 392506..393172 (+) 667 Protein_383 ComF family protein -
  P3L36_RS02295 (P3L36_02295) raiA 393249..393803 (+) 555 WP_000599096.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 48713.62 Da        Isoelectric Point: 10.0898

>NTDB_id=807516 P3L36_RS02285 WP_000432955.1 391217..392506(+) (comFA/cflA) [Streptococcus agalactiae strain Guangzhou-SAG036]
MENYLGRLWTKAQLSEQLRKIAINLPSFIKKGSDYICTRCSSSVAKNCQLPTGNYYCRECIVFGRVTSNENLYYFPQKTF
SKTNSLKWKGGLTPYQNEVSEELLKGISSKENLLVHAVTGAGKTEMIYHSIAKVIDTGGSVCIASPRIDVCLELHKRLSN
DFRCAITLMHGESPSYQRSPLTIATTHQLLKFYHAFDLLIVDEVDAFPYVDNPILYHGVKQALKKNGTSIFLTATSTTEL
ERKVARKELKKLHLARRFHANPLVIPEMVWVSGIQKSLQTQKLPPKLYQLINKQRQTRYPLLLFFPHIAEGQVFTEMLRQ
AFPMEKIGFVSSKSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEG
LLYFLHDGKSKSMHQAIKEIKNMNHIGGF

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=807516 P3L36_RS02285 WP_000432955.1 391217..392506(+) (comFA/cflA) [Streptococcus agalactiae strain Guangzhou-SAG036]
ATGGAAAATTATTTAGGTAGACTTTGGACAAAAGCACAATTATCTGAGCAACTTAGAAAAATTGCAATTAACTTGCCATC
TTTTATAAAGAAAGGAAGCGACTATATTTGTACTCGATGCTCTAGTTCTGTTGCCAAAAATTGCCAATTACCAACTGGAA
ATTATTATTGTAGAGAATGTATAGTTTTTGGAAGAGTTACTAGTAATGAAAATTTATATTATTTCCCACAAAAAACATTT
TCTAAAACGAATTCTTTAAAATGGAAAGGGGGACTGACACCTTATCAAAATGAGGTTTCAGAAGAGTTGTTGAAAGGTAT
TTCAAGTAAGGAAAATCTTCTTGTTCATGCTGTGACAGGGGCTGGTAAAACAGAAATGATATACCACTCTATCGCCAAAG
TAATTGATACTGGAGGGAGCGTTTGTATTGCCAGTCCTAGAATTGATGTTTGTTTAGAATTGCATAAGCGACTTTCAAAC
GATTTTAGATGTGCCATAACATTAATGCATGGAGAATCTCCTTCTTATCAGAGATCCCCTTTAACTATTGCCACAACACA
TCAATTGTTAAAATTTTATCATGCTTTTGATTTGCTAATTGTTGATGAAGTTGATGCTTTTCCATATGTCGACAACCCGA
TACTATACCATGGTGTAAAACAGGCCTTAAAGAAAAACGGAACAAGTATTTTTCTGACTGCAACTTCAACGACTGAGTTA
GAAAGAAAAGTTGCAAGAAAAGAACTAAAAAAATTACATCTAGCTAGGAGATTTCATGCCAATCCGTTAGTGATACCCGA
GATGGTTTGGGTAAGTGGTATCCAGAAAAGCTTGCAGACACAAAAACTACCTCCCAAATTATATCAGCTGATAAATAAAC
AGCGACAAACGAGATATCCTTTGTTATTATTTTTCCCCCATATTGCAGAAGGTCAGGTATTCACCGAAATGTTAAGACAA
GCCTTTCCTATGGAAAAAATTGGTTTTGTTTCAAGTAAGAGCACATCTAGGTTAAAGTTAGTGCAAGATTTTCGAGATAA
CAAATTGTCTATCCTAGTATCAACTACCATTCTAGAGAGAGGAGTAACTTTCCCTAGCGTCGACGTTTTTGTTATACAAG
CAAATCATCATTTGTTTACGAAAAGTTCCTTGGTACAAATTTCAGGAAGAGTTGGAAGAGCATTAGAAAGACCCGAAGGG
CTCCTTTACTTCCTTCATGATGGGAAAAGTAAATCGATGCACCAAGCCATAAAGGAGATTAAAAACATGAATCATATAGG
AGGATTTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(93-240)

Helicase conserved C-terminal domain (Helicase_C)

(286-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

60.187

99.534

0.599
  comFA/cflA Streptococcus pneumoniae Rx1

59.719

99.534

0.594
  comFA/cflA Streptococcus pneumoniae D39

59.719

99.534

0.594
  comFA/cflA Streptococcus pneumoniae R6

59.719

99.534

0.594
  comFA/cflA Streptococcus pneumoniae TIGR4

59.719

99.534

0.594
  comFA/cflA Streptococcus mitis SK321

59.719

99.534

0.594
  comFA Lactococcus lactis subsp. cremoris KW2

50.254

91.841

0.462
  comFA Latilactobacillus sakei subsp. sakei 23K

37.037

100

0.373
  comFA Bacillus subtilis subsp. subtilis str. 168

39.312

94.872

0.373