Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   P3R38_RS07090 Genome accession   NZ_CP120626
Coordinates   1557742..1559979 (+) Length   745 a.a.
NCBI ID   WP_277686946.1    Uniprot ID   -
Organism   Pseudomonas sp. NyZ480     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552742..1564979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R38_RS07070 (P3R38_07070) - 1554619..1555242 (+) 624 WP_027907741.1 glutathione S-transferase -
  P3R38_RS07075 (P3R38_07075) - 1555375..1556307 (+) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  P3R38_RS07080 (P3R38_07080) - 1556304..1557083 (+) 780 WP_104882817.1 ABC transporter permease -
  P3R38_RS07085 (P3R38_07085) - 1556967..1557599 (-) 633 WP_023379391.1 DUF2062 domain-containing protein -
  P3R38_RS07090 (P3R38_07090) comA 1557742..1559979 (+) 2238 WP_277686946.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3R38_RS07095 (P3R38_07095) exbB 1560106..1560741 (+) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P3R38_RS07100 (P3R38_07100) - 1560738..1561172 (+) 435 WP_023379395.1 biopolymer transporter ExbD -
  P3R38_RS07105 (P3R38_07105) lpxK 1561172..1562173 (+) 1002 WP_023379396.1 tetraacyldisaccharide 4'-kinase -
  P3R38_RS07110 (P3R38_07110) - 1562218..1562403 (+) 186 WP_003247142.1 Trm112 family protein -
  P3R38_RS07115 (P3R38_07115) kdsB 1562400..1563164 (+) 765 WP_027907743.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P3R38_RS07120 (P3R38_07120) - 1563164..1563628 (+) 465 WP_104882033.1 low molecular weight protein-tyrosine-phosphatase -
  P3R38_RS07125 (P3R38_07125) murB 1563625..1564644 (+) 1020 WP_104882815.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80532.54 Da        Isoelectric Point: 10.4487

>NTDB_id=807239 P3R38_RS07090 WP_277686946.1 1557742..1559979(+) (comA) [Pseudomonas sp. NyZ480]
MRKGMLALAIGLLCLGFLPALPSVGWLLLLLCCGLGCLCVRWWSVACFLLGVCWACWSAQQALDDRLAPQLDGRTLWLEG
RVVGLPTRTAQGVRFELSQPLSRRAELPTRLQLSWFDGPPLRAGEHWRLAVTLQRPTGLLNPHGPDREASLLARRIGATG
TVKAGEKLSSVAGSWRDQLRQRLLAVQAQGREAALVALVLGDGAALARDDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPHRQPWLPWACGLAMAAALGYGGLAGWGVPVQRACLMLAVVLAWRLRFRHIGSGIPLLLALIAVLLFEPL
AALLPGFWLSFAAVAVLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLFAVPLISLTVLPLAL
LGTLLLPLGSVGEGLLWLAGGLLELLFWLLGKVAGWRSAWMPAALPLWAWLLVAGGALLVLLPRGVPLRGLGGVMLLALW
VPPEQVPQGQVEVWQLDVGQGLAVLLRTRTHSLLYDAGPARGDSDLGEWVVLPTLRKLGVSRLDMMLISHAHADHAGGAQ
AVARGLPIGRLLAGEAQALSGAQPCVSDERWEWDGVRFSLWRWPEAQGSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AASEQPDIDWLQSPHHGSRTSSTEAFIKATKPRGVLISRGRNNGFGHPHPQVIERYRRHGVVIHDTAVEGALRLRLGHRG
GVEGLRAQRRFWRAAAPSPSSQVPR

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=807239 P3R38_RS07090 WP_277686946.1 1557742..1559979(+) (comA) [Pseudomonas sp. NyZ480]
ATGCGCAAAGGGATGCTTGCGCTCGCCATTGGGCTGTTGTGCCTGGGGTTTCTGCCGGCCTTGCCGTCGGTCGGCTGGCT
ATTGCTGTTGCTGTGCTGTGGCTTGGGCTGCCTGTGTGTTCGGTGGTGGTCGGTCGCCTGTTTTCTGCTGGGCGTGTGCT
GGGCCTGCTGGTCGGCCCAGCAGGCCCTGGATGATCGGTTGGCGCCGCAGCTCGATGGCCGTACGTTATGGCTGGAGGGC
AGGGTGGTCGGGTTGCCGACTCGCACCGCGCAAGGCGTGCGTTTTGAGTTGTCGCAGCCACTCTCGCGCCGAGCCGAGTT
ACCGACCCGTCTGCAACTGAGCTGGTTCGACGGTCCGCCGCTGCGCGCGGGCGAACACTGGCGTCTGGCCGTCACCTTGC
AGCGCCCGACAGGCTTGCTCAACCCCCATGGTCCGGACCGCGAGGCAAGCCTGTTGGCCCGACGGATCGGCGCAACCGGC
ACGGTCAAGGCCGGCGAGAAGCTGTCGTCCGTAGCGGGCAGTTGGCGCGACCAACTGCGTCAGCGGCTGCTCGCGGTCCA
GGCACAGGGCCGTGAAGCCGCGCTGGTTGCCTTGGTGTTGGGCGATGGAGCGGCATTGGCCCGGGACGATTGGCAAACCC
TGCAGGCCACGGGCACGGTGCACTTGCTGGTCATCTCCGGGCAACACATCGGTCTGGTGGCCGGCCTGCTGTACGGGTTG
GTCGCCGGGCTGGCGCGCTGGGGGCTCTGGCCTCATCGCCAGCCTTGGCTGCCGTGGGCCTGTGGCCTGGCCATGGCGGC
GGCGCTGGGGTATGGCGGGCTGGCGGGGTGGGGCGTGCCGGTGCAGCGAGCCTGCTTGATGTTGGCCGTGGTACTGGCCT
GGCGCCTGCGCTTCCGCCACATCGGTTCCGGGATACCCTTGCTGTTGGCGCTCATCGCGGTGCTGTTGTTCGAGCCATTG
GCTGCGTTGTTGCCCGGGTTCTGGTTGTCTTTCGCCGCGGTGGCCGTACTCATTTACTGCTTCAGCGCACGTCTGGGTGG
CTGGCGACCCTGGCAAGCCTGGACCCGTGCGCAGTGGGTAATCGCCATTGGCCTGCTGCCAGTGTTGCTCGCCACAGGGC
TGCCGGTCAGCCTGAGTGCGCCCCTGGCCAACCTCTTTGCAGTGCCCTTGATCAGCCTGACGGTGTTGCCGCTGGCGTTG
CTCGGCACGCTGCTGCTGCCATTGGGCAGTGTGGGCGAGGGCTTGCTGTGGCTGGCGGGTGGCTTGTTGGAGCTGCTCTT
CTGGCTTTTGGGCAAGGTGGCGGGTTGGCGTTCTGCCTGGATGCCCGCTGCATTGCCCCTGTGGGCATGGCTGTTGGTGG
CGGGCGGGGCACTGCTGGTGTTGTTGCCCAGAGGCGTGCCACTGCGTGGCTTGGGTGGGGTGATGCTGCTGGCCTTGTGG
GTACCGCCAGAGCAGGTGCCGCAGGGGCAGGTGGAGGTCTGGCAATTGGATGTCGGCCAAGGGTTGGCGGTACTGCTGCG
AACCCGAACCCACAGCCTTCTGTACGATGCAGGGCCAGCACGCGGTGACAGTGACCTGGGTGAATGGGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGGGTGAGCCGCCTGGACATGATGCTGATCAGCCATGCCCATGCCGACCACGCCGGTGGCGCGCAG
GCTGTGGCGCGCGGGTTGCCCATCGGGCGCCTGCTGGCGGGAGAGGCACAGGCGCTGTCTGGAGCGCAGCCCTGCGTCAG
CGATGAGCGCTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCGATGGCCCGAGGCGCAAGGCAGCAATGACCGCTCTT
GCGTGCTACTGGTCGAGGCGCAAGGCGAGCGGCTGCTTTTGGCGGGTGACATGGAGGCGGGTGCCGAGCGTGCCTGGCTG
GCCGCCAGCGAGCAGCCCGACATCGACTGGTTGCAATCGCCCCATCACGGTAGCCGCACGTCGTCCACCGAGGCTTTCAT
CAAGGCCACCAAGCCGCGTGGCGTGTTGATTTCGCGAGGGCGCAACAATGGGTTTGGCCATCCGCACCCGCAGGTGATCG
AACGCTACCGGCGCCATGGCGTGGTGATTCATGATACGGCGGTGGAGGGGGCATTGCGCTTGCGCCTGGGGCATCGCGGT
GGGGTAGAGGGCCTGCGTGCGCAGCGGCGTTTCTGGCGTGCGGCAGCCCCCTCGCCATCCAGCCAGGTACCGCGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.914

96.376

0.568
  comA Ralstonia pseudosolanacearum GMI1000

35.964

100

0.373