Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P3R38_RS07095 Genome accession   NZ_CP120626
Coordinates   1560106..1560741 (+) Length   211 a.a.
NCBI ID   WP_023379394.1    Uniprot ID   A0A2G8MZK3
Organism   Pseudomonas sp. NyZ480     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555106..1565741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R38_RS07075 (P3R38_07075) - 1555375..1556307 (+) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  P3R38_RS07080 (P3R38_07080) - 1556304..1557083 (+) 780 WP_104882817.1 ABC transporter permease -
  P3R38_RS07085 (P3R38_07085) - 1556967..1557599 (-) 633 WP_023379391.1 DUF2062 domain-containing protein -
  P3R38_RS07090 (P3R38_07090) comA 1557742..1559979 (+) 2238 WP_277686946.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3R38_RS07095 (P3R38_07095) exbB 1560106..1560741 (+) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P3R38_RS07100 (P3R38_07100) - 1560738..1561172 (+) 435 WP_023379395.1 biopolymer transporter ExbD -
  P3R38_RS07105 (P3R38_07105) lpxK 1561172..1562173 (+) 1002 WP_023379396.1 tetraacyldisaccharide 4'-kinase -
  P3R38_RS07110 (P3R38_07110) - 1562218..1562403 (+) 186 WP_003247142.1 Trm112 family protein -
  P3R38_RS07115 (P3R38_07115) kdsB 1562400..1563164 (+) 765 WP_027907743.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P3R38_RS07120 (P3R38_07120) - 1563164..1563628 (+) 465 WP_104882033.1 low molecular weight protein-tyrosine-phosphatase -
  P3R38_RS07125 (P3R38_07125) murB 1563625..1564644 (+) 1020 WP_104882815.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.11 Da        Isoelectric Point: 7.3616

>NTDB_id=807240 P3R38_RS07095 WP_023379394.1 1560106..1560741(+) (exbB) [Pseudomonas sp. NyZ480]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=807240 P3R38_RS07095 WP_023379394.1 1560106..1560741(+) (exbB) [Pseudomonas sp. NyZ480]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACTCCGCCGCACCTGTTGGGCCAGGTGTGGATCTGGATCAAGGACA
AACAGCTTACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTGGAGCGCTACAT
CAGCACCTTGGGCACCATCGCCGCCATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAATGCTGCCGTGTTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCATCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8MZK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829