Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P5623_RS19720 Genome accession   NZ_CP120625
Coordinates   3699420..3700061 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain DSM 103869     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3694420..3705061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS19695 (P5623_19695) - 3694797..3695150 (-) 354 WP_019744042.1 hypothetical protein -
  P5623_RS19700 (P5623_19700) degQ 3695656..3695796 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  P5623_RS19705 (P5623_19705) - 3695948..3696871 (+) 924 WP_046526551.1 polyprenyl synthetase family protein -
  P5623_RS19710 (P5623_19710) comX 3696849..3697019 (+) 171 WP_017358941.1 competence pheromone ComX -
  P5623_RS19715 (P5623_19715) comP 3697033..3699339 (+) 2307 WP_017367961.1 ATP-binding protein Regulator
  P5623_RS19720 (P5623_19720) comA 3699420..3700061 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  P5623_RS19725 (P5623_19725) - 3700085..3700474 (+) 390 WP_017367960.1 hotdog fold thioesterase -
  P5623_RS19730 (P5623_19730) mnhG 3700565..3700939 (-) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  P5623_RS19735 (P5623_19735) - 3700923..3701204 (-) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  P5623_RS19740 (P5623_19740) - 3701204..3701683 (-) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  P5623_RS19745 (P5623_19745) - 3701690..3703168 (-) 1479 WP_017367959.1 Na+/H+ antiporter subunit D -
  P5623_RS19750 (P5623_19750) - 3703161..3703502 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  P5623_RS19755 (P5623_19755) - 3703502..3703933 (-) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=807234 P5623_RS19720 WP_007500477.1 3699420..3700061(+) (comA) [Bacillus altitudinis strain DSM 103869]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=807234 P5623_RS19720 WP_007500477.1 3699420..3700061(+) (comA) [Bacillus altitudinis strain DSM 103869]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGCTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718