Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P5657_RS11945 Genome accession   NZ_CP120621
Coordinates   2285600..2286670 (+) Length   356 a.a.
NCBI ID   WP_085186492.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2280600..2291670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS11910 (P5657_11910) yqgY 2280794..2281039 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  P5657_RS11915 (P5657_11915) mgsR 2281271..2281651 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  P5657_RS11925 (P5657_11925) rsbRD 2281875..2282711 (+) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -
  P5657_RS11930 (P5657_11930) yqhB 2282764..2284092 (-) 1329 WP_085186496.1 hemolysin family protein -
  P5657_RS11935 (P5657_11935) corA 2284235..2285188 (+) 954 WP_015483432.1 magnesium transporter CorA -
  P5657_RS11940 (P5657_11940) - 2285190..2285582 (+) 393 WP_170948341.1 hypothetical protein -
  P5657_RS11945 (P5657_11945) comGA 2285600..2286670 (+) 1071 WP_085186492.1 competence protein ComGA Machinery gene
  P5657_RS11950 (P5657_11950) comGB 2286657..2287694 (+) 1038 WP_277709888.1 comG operon protein ComGB Machinery gene
  P5657_RS11955 (P5657_11955) comGC 2287708..2288004 (+) 297 WP_024573391.1 comG operon protein ComGC Machinery gene
  P5657_RS11960 (P5657_11960) comGD 2287994..2288425 (+) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  P5657_RS11965 (P5657_11965) comGE 2288409..2288756 (+) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  P5657_RS11970 (P5657_11970) comGF 2288782..2289165 (+) 384 WP_085186490.1 ComG operon protein ComGF Machinery gene
  P5657_RS11975 (P5657_11975) comGG 2289166..2289540 (+) 375 WP_021480019.1 ComG operon protein ComGG Machinery gene
  P5657_RS11980 (P5657_11980) spoIITA 2289612..2289791 (+) 180 WP_003230176.1 YqzE family protein -
  P5657_RS11985 (P5657_11985) yqzG 2289833..2290159 (-) 327 WP_085186489.1 YqzG/YhdC family protein -
  P5657_RS11990 (P5657_11990) tapA 2290430..2291191 (+) 762 WP_277709892.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40488.67 Da        Isoelectric Point: 9.0175

>NTDB_id=807055 P5657_RS11945 WP_085186492.1 2285600..2286670(+) (comGA) [Bacillus subtilis strain DSM 13019]
MDSIEKLSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHDKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=807055 P5657_RS11945 WP_085186492.1 2285600..2286670(+) (comGA) [Bacillus subtilis strain DSM 13019]
TTGGATTCAATAGAAAAGTTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCCACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGAAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCACAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGTGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATTCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGATAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.157

100

0.992
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362