Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   P5657_RS11955 Genome accession   NZ_CP120621
Coordinates   2287708..2288004 (+) Length   98 a.a.
NCBI ID   WP_024573391.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2282708..2293004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS11930 (P5657_11930) yqhB 2282764..2284092 (-) 1329 WP_085186496.1 hemolysin family protein -
  P5657_RS11935 (P5657_11935) corA 2284235..2285188 (+) 954 WP_015483432.1 magnesium transporter CorA -
  P5657_RS11940 (P5657_11940) - 2285190..2285582 (+) 393 WP_170948341.1 hypothetical protein -
  P5657_RS11945 (P5657_11945) comGA 2285600..2286670 (+) 1071 WP_085186492.1 competence protein ComGA Machinery gene
  P5657_RS11950 (P5657_11950) comGB 2286657..2287694 (+) 1038 WP_277709888.1 comG operon protein ComGB Machinery gene
  P5657_RS11955 (P5657_11955) comGC 2287708..2288004 (+) 297 WP_024573391.1 comG operon protein ComGC Machinery gene
  P5657_RS11960 (P5657_11960) comGD 2287994..2288425 (+) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  P5657_RS11965 (P5657_11965) comGE 2288409..2288756 (+) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  P5657_RS11970 (P5657_11970) comGF 2288782..2289165 (+) 384 WP_085186490.1 ComG operon protein ComGF Machinery gene
  P5657_RS11975 (P5657_11975) comGG 2289166..2289540 (+) 375 WP_021480019.1 ComG operon protein ComGG Machinery gene
  P5657_RS11980 (P5657_11980) spoIITA 2289612..2289791 (+) 180 WP_003230176.1 YqzE family protein -
  P5657_RS11985 (P5657_11985) yqzG 2289833..2290159 (-) 327 WP_085186489.1 YqzG/YhdC family protein -
  P5657_RS11990 (P5657_11990) tapA 2290430..2291191 (+) 762 WP_277709892.1 amyloid fiber anchoring/assembly protein TapA -
  P5657_RS11995 (P5657_11995) sipW 2291175..2291747 (+) 573 WP_134991456.1 signal peptidase I SipW -
  P5657_RS12000 (P5657_12000) tasA 2291812..2292597 (+) 786 WP_014477324.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10831.71 Da        Isoelectric Point: 6.7083

>NTDB_id=807057 P5657_RS11955 WP_024573391.1 2287708..2288004(+) (comGC) [Bacillus subtilis strain DSM 13019]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQITAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=807057 P5657_RS11955 WP_024573391.1 2287708..2288004(+) (comGC) [Bacillus subtilis strain DSM 13019]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATTGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCCTACAAAACATGGTTAAGGCACAAATAACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGGAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

98.98

100

0.99
  comGC Staphylococcus aureus MW2

42.391

93.878

0.398
  comGC Staphylococcus aureus N315

42.391

93.878

0.398
  comYC Streptococcus suis isolate S10

48

76.531

0.367