Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P5657_RS08210 Genome accession   NZ_CP120621
Coordinates   1596953..1597597 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591953..1602597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS08180 (P5657_08180) - 1592376..1592744 (-) 369 WP_038828672.1 hypothetical protein -
  P5657_RS08185 (P5657_08185) - 1592859..1592984 (-) 126 WP_120028613.1 hypothetical protein -
  P5657_RS08190 (P5657_08190) degQ 1593206..1593346 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  P5657_RS08195 (P5657_08195) - 1593531..1594391 (+) 861 WP_032677058.1 polyprenyl synthetase family protein -
  P5657_RS08200 (P5657_08200) comX 1594406..1594567 (+) 162 WP_049140565.1 competence pheromone ComX -
  P5657_RS08205 (P5657_08205) comP 1594575..1596872 (+) 2298 WP_212082410.1 histidine kinase Regulator
  P5657_RS08210 (P5657_08210) comA 1596953..1597597 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  P5657_RS08215 (P5657_08215) yuxO 1597616..1597996 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  P5657_RS08220 (P5657_08220) mnhG 1598037..1598411 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  P5657_RS08225 (P5657_08225) mrpF 1598395..1598679 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  P5657_RS08230 (P5657_08230) mrpE 1598679..1599155 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  P5657_RS08235 (P5657_08235) mrpD 1599161..1600642 (-) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  P5657_RS08240 (P5657_08240) mrpC 1600635..1600976 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  P5657_RS08245 (P5657_08245) mrpB 1600976..1601407 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=807041 P5657_RS08210 WP_003220716.1 1596953..1597597(+) (comA) [Bacillus subtilis strain DSM 13019]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=807041 P5657_RS08210 WP_003220716.1 1596953..1597597(+) (comA) [Bacillus subtilis strain DSM 13019]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1