Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P5657_RS06405 Genome accession   NZ_CP120621
Coordinates   1236446..1237135 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain DSM 13019     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231446..1242135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS06370 (P5657_06370) flgN 1231627..1232109 (-) 483 WP_014481048.1 flagellar protein FlgN -
  P5657_RS06375 (P5657_06375) flgM 1232125..1232391 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5657_RS06380 (P5657_06380) yvyF 1232472..1232891 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  P5657_RS06385 (P5657_06385) comFC 1232964..1233686 (-) 723 WP_134991774.1 comF operon protein ComFC Machinery gene
  P5657_RS06390 (P5657_06390) comFB 1233650..1233946 (-) 297 WP_003227989.1 late competence protein ComFB -
  P5657_RS06395 (P5657_06395) comFA 1234006..1235397 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  P5657_RS06400 (P5657_06400) fakBA 1235503..1236348 (-) 846 WP_134991773.1 DegV family protein -
  P5657_RS06405 (P5657_06405) degU 1236446..1237135 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5657_RS06410 (P5657_06410) degS 1237218..1238375 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5657_RS06415 (P5657_06415) - 1238592..1239245 (+) 654 WP_014481055.1 YigZ family protein -
  P5657_RS06420 (P5657_06420) - 1239245..1240209 (+) 965 Protein_1221 LCP family protein -
  P5657_RS06425 (P5657_06425) - 1240834..1241298 (+) 465 WP_228394534.1 hypothetical protein -
  P5657_RS06430 (P5657_06430) - 1241347..1241802 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=807034 P5657_RS06405 WP_003219701.1 1236446..1237135(-) (degU) [Bacillus subtilis strain DSM 13019]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=807034 P5657_RS06405 WP_003219701.1 1236446..1237135(-) (degU) [Bacillus subtilis strain DSM 13019]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1