Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P5657_RS06385 Genome accession   NZ_CP120621
Coordinates   1232964..1233686 (-) Length   240 a.a.
NCBI ID   WP_134991774.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1227964..1238686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS06350 (P5657_06350) fliW 1228103..1228534 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  P5657_RS06355 (P5657_06355) yviE 1228555..1229130 (-) 576 WP_014481045.1 DUF6470 family protein -
  P5657_RS06360 (P5657_06360) flgL 1229177..1230073 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  P5657_RS06365 (P5657_06365) flgK 1230084..1231608 (-) 1525 Protein_1210 flagellar hook-associated protein FlgK -
  P5657_RS06370 (P5657_06370) flgN 1231627..1232109 (-) 483 WP_014481048.1 flagellar protein FlgN -
  P5657_RS06375 (P5657_06375) flgM 1232125..1232391 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5657_RS06380 (P5657_06380) yvyF 1232472..1232891 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  P5657_RS06385 (P5657_06385) comFC 1232964..1233686 (-) 723 WP_134991774.1 comF operon protein ComFC Machinery gene
  P5657_RS06390 (P5657_06390) comFB 1233650..1233946 (-) 297 WP_003227989.1 late competence protein ComFB -
  P5657_RS06395 (P5657_06395) comFA 1234006..1235397 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  P5657_RS06400 (P5657_06400) fakBA 1235503..1236348 (-) 846 WP_134991773.1 DegV family protein -
  P5657_RS06405 (P5657_06405) degU 1236446..1237135 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5657_RS06410 (P5657_06410) degS 1237218..1238375 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27533.84 Da        Isoelectric Point: 9.3154

>NTDB_id=807032 P5657_RS06385 WP_134991774.1 1232964..1233686(-) (comFC) [Bacillus subtilis strain DSM 13019]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRIRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=807032 P5657_RS06385 WP_134991774.1 1232964..1233686(-) (comFC) [Bacillus subtilis strain DSM 13019]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAATAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCTGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988