Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P5657_RS06395 Genome accession   NZ_CP120621
Coordinates   1234006..1235397 (-) Length   463 a.a.
NCBI ID   WP_014481052.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1229006..1240397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS06360 (P5657_06360) flgL 1229177..1230073 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  P5657_RS06365 (P5657_06365) flgK 1230084..1231608 (-) 1525 Protein_1210 flagellar hook-associated protein FlgK -
  P5657_RS06370 (P5657_06370) flgN 1231627..1232109 (-) 483 WP_014481048.1 flagellar protein FlgN -
  P5657_RS06375 (P5657_06375) flgM 1232125..1232391 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5657_RS06380 (P5657_06380) yvyF 1232472..1232891 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  P5657_RS06385 (P5657_06385) comFC 1232964..1233686 (-) 723 WP_134991774.1 comF operon protein ComFC Machinery gene
  P5657_RS06390 (P5657_06390) comFB 1233650..1233946 (-) 297 WP_003227989.1 late competence protein ComFB -
  P5657_RS06395 (P5657_06395) comFA 1234006..1235397 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  P5657_RS06400 (P5657_06400) fakBA 1235503..1236348 (-) 846 WP_134991773.1 DegV family protein -
  P5657_RS06405 (P5657_06405) degU 1236446..1237135 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5657_RS06410 (P5657_06410) degS 1237218..1238375 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5657_RS06415 (P5657_06415) - 1238592..1239245 (+) 654 WP_014481055.1 YigZ family protein -
  P5657_RS06420 (P5657_06420) - 1239245..1240209 (+) 965 Protein_1221 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52543.49 Da        Isoelectric Point: 9.7976

>NTDB_id=807033 P5657_RS06395 WP_014481052.1 1234006..1235397(-) (comFA) [Bacillus subtilis strain DSM 13019]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=807033 P5657_RS06395 WP_014481052.1 1234006..1235397(-) (comFA) [Bacillus subtilis strain DSM 13019]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGAAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAACATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.056

100

0.981