Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   P5657_RS05140 Genome accession   NZ_CP120621
Coordinates   981396..981515 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain DSM 13019     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 976396..986515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS05120 (P5657_05120) pbpG 976755..978830 (-) 2076 WP_085185512.1 transglycosylase domain-containing protein -
  P5657_RS05125 (P5657_05125) speE 979032..979862 (+) 831 WP_003227543.1 spermidine synthase -
  P5657_RS05130 (P5657_05130) speB 979923..980795 (+) 873 WP_003227545.1 agmatinase -
  P5657_RS05135 (P5657_05135) ywhH 980826..981298 (-) 473 Protein_965 YbaK/EbsC family protein -
  P5657_RS05140 (P5657_05140) phrF 981396..981515 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  P5657_RS05145 (P5657_05145) rapF 981499..982644 (-) 1146 WP_038829812.1 response regulator aspartate phosphatase RapF Regulator
  P5657_RS21395 - 982647..982877 (+) 231 WP_069703618.1 hypothetical protein -
  P5657_RS05150 (P5657_05150) ywhK 982874..984229 (+) 1356 WP_134154701.1 YncE family protein -
  P5657_RS05155 (P5657_05155) ywhL 984269..985645 (+) 1377 WP_277710304.1 YncE family protein -
  P5657_RS05160 (P5657_05160) albG 985651..986352 (-) 702 WP_277710305.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=807028 P5657_RS05140 WP_009968329.1 981396..981515(-) (phrF) [Bacillus subtilis strain DSM 13019]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=807028 P5657_RS05140 WP_009968329.1 981396..981515(-) (phrF) [Bacillus subtilis strain DSM 13019]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487