Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   P5649_RS06740 Genome accession   NZ_CP120613
Coordinates   1309055..1309174 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain DSM 23521     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304055..1314174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS06720 (P5649_06720) pbpG 1304411..1306486 (-) 2076 WP_003227540.1 transglycosylase domain-containing protein -
  P5649_RS06725 (P5649_06725) speE 1306688..1307518 (+) 831 WP_003227543.1 spermidine synthase -
  P5649_RS06730 (P5649_06730) speB 1307579..1308451 (+) 873 WP_003227545.1 agmatinase -
  P5649_RS06735 (P5649_06735) ywhH 1308483..1308956 (-) 474 WP_003227547.1 YbaK/EbsC family protein -
  P5649_RS06740 (P5649_06740) phrF 1309055..1309174 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  P5649_RS06745 (P5649_06745) rapF 1309158..1310303 (-) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  P5649_RS22130 - 1310306..1310536 (+) 231 WP_009968328.1 hypothetical protein -
  P5649_RS06750 (P5649_06750) ywhK 1310533..1311888 (+) 1356 WP_003227552.1 YncE family protein -
  P5649_RS06755 (P5649_06755) ywhL 1311927..1313303 (+) 1377 WP_003244415.1 YncE family protein -
  P5649_RS06760 (P5649_06760) albG 1313309..1314010 (-) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=806890 P5649_RS06740 WP_009968329.1 1309055..1309174(-) (phrF) [Bacillus subtilis strain DSM 23521]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=806890 P5649_RS06740 WP_009968329.1 1309055..1309174(-) (phrF) [Bacillus subtilis strain DSM 23521]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487