Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   P5653_RS19235 Genome accession   NZ_CP120610
Coordinates   3764632..3765789 (-) Length   385 a.a.
NCBI ID   WP_020453119.1    Uniprot ID   A0A6I7TVP7
Organism   Bacillus paralicheniformis strain DSM 28591     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3759632..3770789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5653_RS19205 (P5653_19205) - 3759868..3760289 (-) 422 Protein_3743 TIGR03826 family flagellar region protein -
  P5653_RS19210 (P5653_19210) comFC 3760348..3761085 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  P5653_RS19215 (P5653_19215) - 3761042..3761326 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  P5653_RS19220 (P5653_19220) comFA 3761381..3762775 (-) 1395 WP_020453117.1 DEAD/DEAH box helicase Machinery gene
  P5653_RS19225 (P5653_19225) - 3762899..3763741 (-) 843 WP_020453118.1 DegV family protein -
  P5653_RS19230 (P5653_19230) degU 3763861..3764550 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  P5653_RS19235 (P5653_19235) degS 3764632..3765789 (-) 1158 WP_020453119.1 histidine kinase Regulator
  P5653_RS19240 (P5653_19240) - 3766012..3766650 (+) 639 WP_023856394.1 YigZ family protein -
  P5653_RS19245 (P5653_19245) - 3766665..3767743 (+) 1079 Protein_3751 LCP family protein -
  P5653_RS19250 (P5653_19250) - 3767796..3768179 (-) 384 WP_020453122.1 hypothetical protein -
  P5653_RS19255 (P5653_19255) - 3768288..3769352 (-) 1065 WP_020453123.1 MraY family glycosyltransferase -
  P5653_RS19260 (P5653_19260) - 3769483..3770670 (-) 1188 WP_230631857.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44650.34 Da        Isoelectric Point: 6.7862

>NTDB_id=806858 P5653_RS19235 WP_020453119.1 3764632..3765789(-) (degS) [Bacillus paralicheniformis strain DSM 28591]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEDRRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=806858 P5653_RS19235 WP_020453119.1 3764632..3765789(-) (degS) [Bacillus paralicheniformis strain DSM 28591]
GTGAGTGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGATGGGAGCAAGGA
TGAGGTCTTTCAAATCGGAGAGCAGTCCCGTCAGCAATATGAAGGCTTGGTAGAAGAGCTGAAGCAGATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGAAACCGCTTGTCTGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGCCAGATTACCGTCGTCTTAAACTATTTAAATCAGGATCTGCGCCAGGTTGGCGTTCTCCTA
GAAGATGCGCAGGCCAAACAGGATTTCGGACTGCGGATCATCGAAGCCCAAGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATCCACGACGGCCCTGCGCAAATGCTGGCCAACGTCATGATGAGATCTGAGCTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAGAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGATTGATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATCCATTTCCAATGCATCGGAGAATCCGAAGATAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TTTTCCGGCTTGCACAGGAAGCAGTGACAAACGCCTTAAAACACTCCGAATCAACTGAGATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGTTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTTAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGATTTGCTCGAAGGTTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATTTTGATTAAAGTTCCGCTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894