Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P5653_RS19220 Genome accession   NZ_CP120610
Coordinates   3761381..3762775 (-) Length   464 a.a.
NCBI ID   WP_020453117.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain DSM 28591     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3756381..3767775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5653_RS19185 (P5653_19185) flgL 3756566..3757477 (-) 912 WP_020453110.1 flagellar hook-associated protein FlgL -
  P5653_RS19190 (P5653_19190) flgK 3757488..3759011 (-) 1524 WP_043054491.1 flagellar hook-associated protein FlgK -
  P5653_RS19195 (P5653_19195) - 3759027..3759503 (-) 477 WP_023856391.1 flagellar protein FlgN -
  P5653_RS19200 (P5653_19200) flgM 3759522..3759788 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5653_RS19205 (P5653_19205) - 3759868..3760289 (-) 422 Protein_3743 TIGR03826 family flagellar region protein -
  P5653_RS19210 (P5653_19210) comFC 3760348..3761085 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  P5653_RS19215 (P5653_19215) - 3761042..3761326 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  P5653_RS19220 (P5653_19220) comFA 3761381..3762775 (-) 1395 WP_020453117.1 DEAD/DEAH box helicase Machinery gene
  P5653_RS19225 (P5653_19225) - 3762899..3763741 (-) 843 WP_020453118.1 DegV family protein -
  P5653_RS19230 (P5653_19230) degU 3763861..3764550 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  P5653_RS19235 (P5653_19235) degS 3764632..3765789 (-) 1158 WP_020453119.1 histidine kinase Regulator
  P5653_RS19240 (P5653_19240) - 3766012..3766650 (+) 639 WP_023856394.1 YigZ family protein -
  P5653_RS19245 (P5653_19245) - 3766665..3767743 (+) 1079 Protein_3751 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53050.78 Da        Isoelectric Point: 9.7663

>NTDB_id=806856 P5653_RS19220 WP_020453117.1 3761381..3762775(-) (comFA) [Bacillus paralicheniformis strain DSM 28591]
MIHIEHPASYSCELRSCLEQRHLLKSELSFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGMEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPLRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=806856 P5653_RS19220 WP_020453117.1 3761381..3762775(-) (comFA) [Bacillus paralicheniformis strain DSM 28591]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTTCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGATGGAAATCGCCGCTTTATACGGAGGAAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTACGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCTGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGTAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(318-424)

Type III restriction enzyme, res subunit (ResIII)

(122-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.424

98.707

0.567