Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   RLT59_RS08470 Genome accession   NZ_CP134612
Coordinates   1902090..1902884 (+) Length   264 a.a.
NCBI ID   WP_024489034.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897090..1907884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS08455 (RLT59_08455) - 1897340..1897876 (+) 537 WP_311302846.1 TerD family protein -
  RLT59_RS08460 (RLT59_08460) - 1897980..1900886 (-) 2907 WP_311302847.1 vitamin B12-dependent ribonucleotide reductase -
  RLT59_RS08465 (RLT59_08465) nrdR 1901045..1901557 (-) 513 WP_073737717.1 transcriptional regulator NrdR -
  RLT59_RS08470 (RLT59_08470) dinR/lexA 1902090..1902884 (+) 795 WP_024489034.1 transcriptional repressor LexA Regulator
  RLT59_RS08475 (RLT59_08475) - 1902969..1904939 (-) 1971 WP_311302848.1 ATP-dependent DNA helicase -
  RLT59_RS08480 (RLT59_08480) - 1904990..1906951 (-) 1962 WP_311302849.1 IucA/IucC family siderophore biosynthesis protein -
  RLT59_RS08485 (RLT59_08485) - 1907012..1907791 (-) 780 WP_311307650.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28651.39 Da        Isoelectric Point: 7.4242

>NTDB_id=806857 RLT59_RS08470 WP_024489034.1 1902090..1902884(+) (dinR/lexA) [Streptomyces sp. ITFR-6]
MTTTADSAIITAQDRSQSRREPVHAMNDSATNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=806857 RLT59_RS08470 WP_024489034.1 1902090..1902884(+) (dinR/lexA) [Streptomyces sp. ITFR-6]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACGCGAGCCGGTGCATGCCATGAA
TGACTCAGCCACGAACACGGAGGGGCCCGAGCCCGCGCGCCCAGCGCGCTCGCTTCCCGGGCGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGATTCCGTGCAGCGGCGGGGATACCCC
CCGTCCATGCGGGAGATCGGCCAGGCGGTGGGCCTTTCCAGTACGTCCTCCGTCGCGCACCAGCTCATGGCTCTGGAACG
CAAGGGTTTCCTGCGCCGCGACCCCCACCGCCCCCGGGCGTACGAGGTTCGCGGTTCGGACCAGCCCAGCACGCAGCCCA
CGGACACCACCGGGAAGCCCGCGGCTTCGTACGTACCGCTGGTGGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCAGAG
GAGTCCGTGGAGGATGTCTTTCCGCTCCCCCGCCAGCTGGTCGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAAGCTGCGATCTGCGACGGGGACTGGGTCACTGTCCGGCGCCAGCCCGTGGCGGAGAACGGCGACATTG
TCGCGGCGATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGTCATGTCTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACCATTCTCGGCAAGGTCGTGGCGGTGCTGCGGAGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371