Detailed information NTG0806833

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: RLT58_RS24135
• Genome accession: NZ_CP134609
• Coordinates: 5457635..5458933 (+)
• Length: 432 a.a.
• NCBI ID: WP_311312452.1
• Uniprot ID: -
• Organism: Streptomyces sp. ITFR-16
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5452635..5463933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RLT58_RS24105 (RLT58_24105)	-	5453687..5453881 (+)	195	WP_136325240.1	hypothetical protein	-
RLT58_RS24120 (RLT58_24120)	tig	5454448..5455842 (+)	1395	WP_311312450.1	trigger factor	-
RLT58_RS24125 (RLT58_24125)	-	5456109..5456714 (+)	606	WP_018551584.1	ATP-dependent Clp protease proteolytic subunit	-
RLT58_RS24130 (RLT58_24130)	clpP	5456794..5457477 (+)	684	WP_311312451.1	ATP-dependent Clp protease proteolytic subunit	Regulator
RLT58_RS24135 (RLT58_24135)	clpX	5457635..5458933 (+)	1299	WP_311312452.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
RLT58_RS24140 (RLT58_24140)	-	5459012..5460010 (-)	999	WP_311312453.1	hypothetical protein	-
RLT58_RS24145 (RLT58_24145)	-	5460151..5462772 (+)	2622	WP_311312454.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 432 a.a.
• Molecular weight: 47332.15 Da
• Isoelectric Point: 4.7809

>NTDB_id=806833 RLT58_RS24135 WP_311312452.1 5457635..5458933(+) (clpX) [Streptomyces sp. ITFR-16]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGANRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
ADVVRNNVNPTLVPREPRTIGKGDDGRHEKSA

Nucleotide

• Length: 1299 bp

>NTDB_id=806833 RLT58_RS24135 WP_311312452.1 5457635..5458933(+) (clpX) [Streptomyces sp. ITFR-16]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCGGAGACGA
GCGAGGTCCGCTGGGAGGAACTTCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGGGAGAACGGCGGCGGGGCGAACCG
CGACGACGCGATCGAGCTCGCCAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACACTCCTCGCGCAGA
CGCTGGCCCGGATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTCTCCGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCCGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCTCCGGCCTGGAGAAGATCATCGAGTCCCGGGCCGGCGC
GAAGGGCATCGGCTTCGGCGCCACGATCCGCTCCAAGCTGGAGATCCAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCGGTCCTGACCTCGGTCCACAACCTGGACCGC
GAGGCGCTGCTCCAGATCCTCATCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTGTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCCAGACCGGCGCCCGCGGCCTGC
GCGCGATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACC
GCGGACGTGGTCCGCAACAACGTCAACCCCACCCTGGTCCCGCGCGAACCCCGCACGATCGGCAAGGGCGACGACGGCCG
CCACGAGAAGTCGGCGTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.93	93.056	0.595
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.398	95.37	0.509