Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RLT58_RS24130 Genome accession   NZ_CP134609
Coordinates   5456794..5457477 (+) Length   227 a.a.
NCBI ID   WP_311312451.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5451794..5462477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS24100 (RLT58_24100) - 5452066..5453208 (-) 1143 WP_311312449.1 acyltransferase family protein -
  RLT58_RS24105 (RLT58_24105) - 5453687..5453881 (+) 195 WP_136325240.1 hypothetical protein -
  RLT58_RS24120 (RLT58_24120) tig 5454448..5455842 (+) 1395 WP_311312450.1 trigger factor -
  RLT58_RS24125 (RLT58_24125) - 5456109..5456714 (+) 606 WP_018551584.1 ATP-dependent Clp protease proteolytic subunit -
  RLT58_RS24130 (RLT58_24130) clpP 5456794..5457477 (+) 684 WP_311312451.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RLT58_RS24135 (RLT58_24135) clpX 5457635..5458933 (+) 1299 WP_311312452.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RLT58_RS24140 (RLT58_24140) - 5459012..5460010 (-) 999 WP_311312453.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24724.05 Da        Isoelectric Point: 4.6747

>NTDB_id=806832 RLT58_RS24130 WP_311312451.1 5456794..5457477(+) (clpP) [Streptomyces sp. ITFR-16]
MVNTHMNNFSGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEELLAKHSTTPIDKIRDDIERDKILTAEDALAYGLVDQIVSTRKSAAGAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=806832 RLT58_RS24130 WP_311312451.1 5456794..5457477(+) (clpP) [Streptomyces sp. ITFR-16]
ATGGTGAACACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCCATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTGCTGCTCGCCGCAGGCACCC
CGGGCAAGCGCATGGCGCTGCCCAACGCCCGTGTCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGGACCCAGCTGGAGGAGCTGCTGGCGAAGCACTCCACCACGCC
GATCGACAAGATCCGTGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCCCTGGCCTACGGTCTGGTCGACC
AGATCGTCTCGACCCGCAAGAGCGCGGCCGGAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.26

0.401
  clpP Streptococcus pyogenes MGAS315

44.845

85.463

0.383
  clpP Streptococcus pyogenes JRS4

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Streptococcus pneumoniae Rx1

43.979

84.141

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

84.141

0.37
  clpP Streptococcus pneumoniae R6

43.979

84.141

0.37
  clpP Streptococcus pneumoniae TIGR4

43.979

84.141

0.37
  clpP Streptococcus pneumoniae D39

43.979

84.141

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

84.141

0.366