Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RLT57_RS05540 Genome accession   NZ_CP134605
Coordinates   1235421..1237517 (-) Length   698 a.a.
NCBI ID   WP_311296239.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1230421..1242517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS05525 (RLT57_05525) - 1230805..1231788 (-) 984 WP_311296236.1 TerC family protein -
  RLT57_RS05530 (RLT57_05530) - 1232106..1234568 (-) 2463 WP_399129768.1 TerD family protein -
  RLT57_RS05535 (RLT57_05535) - 1234674..1235252 (-) 579 WP_311296238.1 TerD family protein -
  RLT57_RS05540 (RLT57_05540) uvrB 1235421..1237517 (-) 2097 WP_311296239.1 excinuclease ABC subunit UvrB Machinery gene
  RLT57_RS05545 (RLT57_05545) - 1237614..1238141 (+) 528 WP_311296240.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RLT57_RS05550 (RLT57_05550) - 1238380..1238745 (-) 366 WP_311296241.1 tetratricopeptide repeat protein -
  RLT57_RS05555 (RLT57_05555) coaE 1238877..1239470 (-) 594 WP_311296242.1 dephospho-CoA kinase -
  RLT57_RS05560 (RLT57_05560) - 1239514..1240449 (-) 936 WP_311296243.1 PAC2 family protein -
  RLT57_RS05565 (RLT57_05565) rpsA 1240784..1242277 (-) 1494 WP_311296244.1 30S ribosomal protein S1 -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78455.95 Da        Isoelectric Point: 4.7264

>NTDB_id=806741 RLT57_RS05540 WP_311296239.1 1235421..1237517(-) (uvrB) [Streptomyces sp. ITFR-21]
MRPVSDIERSVAPFEVVSPFQPSGDQPTAIDDLEKRVRAGEQDVVLLGATGTGKSATTAWMIERLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYIDRMVRLNVGDVIDRDQLLRRFVDIQYTRNDLAFTRGTFRVRGDTVEIFPVYEELAVRIEMFGDEIEALYTLHPLTG
EVITEDRQIYVFPASHYVAGPERMERAIAGIEQELEAQLPLLERQGKLLEAQRLRMRTTYDIEMMRQIGTCAGIENYSRH
IDGRGPGSAPDTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYL
SATPGTYELSRGEGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRLRTEKDERVLVTTLTKKMSEDLTDYLLELGIQV
RYLHSDIDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPAMAKAIDETNRRRAKQIAYNEERGVDPQPLRKKIAGILDSFAREDADTEELLGSGRQRSRGKAPVPGLSAKAAG
KRGGAALPAEELADLIAQLTEQMHAAAAELQFEVAARLRDELGELKKELRQMREVGTA

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=806741 RLT57_RS05540 WP_311296239.1 1235421..1237517(-) (uvrB) [Streptomyces sp. ITFR-21]
ATGCGGCCCGTATCAGATATCGAACGCAGTGTGGCGCCCTTCGAGGTCGTCAGCCCCTTCCAGCCCAGCGGCGACCAGCC
GACCGCCATCGACGACCTCGAAAAGCGCGTCCGCGCGGGTGAGCAGGACGTGGTGCTGCTCGGCGCGACCGGTACGGGCA
AGTCCGCGACCACCGCGTGGATGATCGAGCGGCTCCAGCGGCCCACCCTGGTAATGGCGCCGAACAAGACCCTCGCGGCG
CAGCTCGCCAACGAGTTCCGGGAGCTGCTGCCCAACAACGCCGTCGAGTACTTCGTCTCCTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGACGGACACCTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTCGAACGGCTGCGGCACT
CCGCCACCAACTCGCTGCTGACCCGGCGGGACGTGGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACATCGACCGCATGGTCCGGCTCAACGTCGGGGACGTCATCGACCGCGACCAGCTGCTGCGCAGGTTCGTCGA
CATCCAGTACACCCGCAACGACCTGGCCTTCACCCGCGGCACCTTCCGGGTCCGCGGCGACACCGTGGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGGATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTACACCCTCCACCCGCTGACCGGC
GAGGTGATCACCGAGGACCGCCAGATCTACGTCTTCCCCGCCTCGCACTACGTGGCCGGGCCCGAGCGGATGGAGCGGGC
CATCGCCGGCATCGAGCAGGAGCTGGAGGCGCAGCTGCCGCTGCTGGAGCGGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACCTACGACATCGAGATGATGCGGCAGATCGGCACCTGCGCCGGCATCGAGAACTACTCGCGGCAC
ATCGACGGCCGCGGGCCCGGCAGCGCGCCCGACACCCTGATCGACTACTTCCCCGAGGACTTCCTGCTGGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCGCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCGGCGCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGGGTGGGGCAGACGGTCTACCTG
TCCGCGACCCCGGGCACGTACGAGCTGTCCCGCGGCGAGGGCGTGGTGGAGCAGATCATCCGGCCCACCGGCCTGGTCGA
CCCCGAGGTGGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGGCTGCGCACCGAGAAGGACG
AGCGGGTCCTGGTCACCACGCTGACCAAGAAGATGTCCGAGGACCTCACCGACTACCTGCTGGAGCTCGGCATCCAGGTC
CGCTACCTGCACAGCGACATCGACACGCTGCGCCGGGTGGAGCTGCTGCGGGAGCTGCGGGCCGGTGAGTACGACGTGCT
GGTCGGCATCAACCTGCTGCGGGAGGGCCTGGACCTGCCCGAGGTGTCGCTGGTGGCCATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGGTCGGGCACCTCGCTGATCCAGACCATCGGCCGCGCCGCCCGCAACGTCTCCGGGCAGGTGCACATGTAC
GCGGACCGGATCACCCCGGCGATGGCGAAGGCCATCGACGAGACCAACCGGCGCCGGGCGAAGCAGATCGCGTACAACGA
GGAGCGGGGCGTGGACCCGCAGCCGCTGCGCAAGAAGATCGCCGGCATCCTGGACTCCTTCGCCCGCGAGGACGCCGACA
CCGAGGAGCTGCTGGGCTCCGGGCGGCAGCGCTCGCGCGGCAAGGCGCCGGTGCCGGGCCTGTCCGCCAAGGCCGCAGGC
AAGCGAGGCGGCGCCGCGCTGCCCGCCGAGGAACTCGCCGATCTCATCGCCCAGCTGACCGAGCAGATGCACGCCGCCGC
GGCCGAGCTGCAGTTCGAGGTCGCCGCCCGGCTGCGCGACGAACTGGGCGAACTGAAGAAGGAGCTGCGGCAGATGCGCG
AGGTGGGAACGGCGTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(655-688)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(168-257)

Type III restriction enzyme, res subunit (ResIII)

(24-132)

Helicase conserved C-terminal domain (Helicase_C)

(448-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.567

96.562

0.556
  uvrB Streptococcus pneumoniae R6

57.567

96.562

0.556
  uvrB Streptococcus pneumoniae D39

57.567

96.562

0.556