Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   P5637_RS13330 Genome accession   NZ_CP120601
Coordinates   2560147..2560287 (-) Length   46 a.a.
NCBI ID   WP_003184860.1    Uniprot ID   P69890
Organism   Bacillus paralicheniformis strain PRO109     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2555147..2565287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS13305 (P5637_13305) - 2555440..2555829 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  P5637_RS13310 (P5637_13310) comA 2555846..2556484 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  P5637_RS13315 (P5637_13315) comP 2556571..2558886 (-) 2316 WP_020452789.1 ATP-binding protein Regulator
  P5637_RS13320 (P5637_13320) comX 2558907..2559077 (-) 171 WP_020452790.1 competence pheromone ComX -
  P5637_RS13325 (P5637_13325) - 2559049..2559960 (-) 912 WP_020452791.1 polyprenyl synthetase family protein -
  P5637_RS13330 (P5637_13330) degQ 2560147..2560287 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  P5637_RS13335 (P5637_13335) - 2560899..2561120 (+) 222 WP_230368259.1 hypothetical protein -
  P5637_RS13340 (P5637_13340) - 2561162..2562382 (-) 1221 WP_101561518.1 HDOD domain-containing protein -
  P5637_RS13345 (P5637_13345) - 2562560..2563969 (-) 1410 WP_229029889.1 nicotinate phosphoribosyltransferase -
  P5637_RS13350 (P5637_13350) - 2564047..2564598 (-) 552 WP_020452795.1 isochorismatase family cysteine hydrolase -
  P5637_RS13355 (P5637_13355) - 2564784..2565185 (-) 402 WP_026580054.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5747.56 Da        Isoelectric Point: 8.4596

>NTDB_id=806660 P5637_RS13330 WP_003184860.1 2560147..2560287(-) (degQ) [Bacillus paralicheniformis strain PRO109]
MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTYLKTS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=806660 P5637_RS13330 WP_003184860.1 2560147..2560287(-) (degQ) [Bacillus paralicheniformis strain PRO109]
GTGGAAAAGCAACAAATTGAAGAATTAAAACAACTGCTTTGGCGGCTAGAGAATGAAATCAGAGAAACAAAGGACTCCTT
GCGCAAGATTAACAAAAGCATTGATCAATACGATAAGTACACATATCTAAAAACCTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P69890

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

71.429

91.304

0.652