Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OO850_RS20850 Genome accession   NZ_AP026116
Coordinates   4121001..4121633 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain CEC13002     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4116001..4126633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO850_RS20825 (CEC13002_40110) yheS 4116170..4118083 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  OO850_RS20830 (CEC13002_40120) yheT 4118083..4119105 (+) 1023 WP_000057377.1 hydrolase -
  OO850_RS20835 (CEC13002_40130) yheU 4119099..4119317 (+) 219 WP_000907085.1 YheU family protein -
  OO850_RS20840 (CEC13002_40140) prkB 4119371..4120240 (+) 870 WP_001274677.1 phosphoribulokinase -
  OO850_RS20845 (CEC13002_40150) yhfA 4120295..4120699 (-) 405 WP_001148908.1 OsmC family protein -
  OO850_RS20850 (CEC13002_40160) crp 4121001..4121633 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  OO850_RS20855 (CEC13002_40170) yhfK 4121684..4123774 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  OO850_RS20860 (CEC13002_40180) argD 4123841..4125061 (-) 1221 WP_264831536.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  OO850_RS20865 (CEC13002_40190) pabA 4125147..4125710 (-) 564 WP_000601867.1 aminodeoxychorismate synthase component 2 -
  OO850_RS20870 (CEC13002_40200) fic 4125742..4126344 (-) 603 WP_001280650.1 putative adenosine monophosphate-protein transferase Fic -
  OO850_RS20875 (CEC13002_40210) yhfG 4126334..4126501 (-) 168 WP_000736862.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=80662 OO850_RS20850 WP_000242755.1 4121001..4121633(+) (crp) [Escherichia coli strain CEC13002]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=80662 OO850_RS20850 WP_000242755.1 4121001..4121633(+) (crp) [Escherichia coli strain CEC13002]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCTGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTCAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467