Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P5638_RS16880 Genome accession   NZ_CP120599
Coordinates   3293327..3293905 (-) Length   192 a.a.
NCBI ID   WP_034282183.1    Uniprot ID   -
Organism   Bacillus safensis strain PRO114     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3288327..3298905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS16855 (P5638_16855) - 3289261..3290019 (-) 759 WP_024426539.1 ATP-binding cassette domain-containing protein -
  P5638_RS16860 (P5638_16860) - 3290010..3290960 (-) 951 WP_024425487.1 iron chelate uptake ABC transporter family permease subunit -
  P5638_RS16865 (P5638_16865) ceuB 3290953..3291903 (-) 951 WP_024426541.1 ABC transporter permease Machinery gene
  P5638_RS16870 (P5638_16870) - 3292065..3292343 (-) 279 WP_056766863.1 barstar family protein -
  P5638_RS16875 (P5638_16875) - 3292545..3293027 (-) 483 WP_024425482.1 hypothetical protein -
  P5638_RS16880 (P5638_16880) comK 3293327..3293905 (-) 579 WP_034282183.1 competence protein ComK Regulator
  P5638_RS16885 (P5638_16885) - 3294195..3294431 (+) 237 WP_008348804.1 IDEAL domain-containing protein -
  P5638_RS16890 (P5638_16890) - 3294488..3295348 (-) 861 WP_024425480.1 SDR family oxidoreductase -
  P5638_RS16895 (P5638_16895) - 3295491..3297023 (+) 1533 WP_034621822.1 FAD-dependent oxidoreductase -
  P5638_RS16900 (P5638_16900) - 3297115..3298410 (+) 1296 WP_024426546.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22322.36 Da        Isoelectric Point: 8.7962

>NTDB_id=806534 P5638_RS16880 WP_034282183.1 3293327..3293905(-) (comK) [Bacillus safensis strain PRO114]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNKY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=806534 P5638_RS16880 WP_034282183.1 3293327..3293905(-) (comK) [Bacillus safensis strain PRO114]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGC
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAAATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615