Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P5638_RS10915 Genome accession   NZ_CP120599
Coordinates   2143493..2145226 (+) Length   577 a.a.
NCBI ID   WP_025092992.1    Uniprot ID   A0A5C0WLT9
Organism   Bacillus safensis strain PRO114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2138493..2150226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS10890 (P5638_10890) - 2138804..2139064 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  P5638_RS10895 (P5638_10895) - 2139054..2139943 (+) 890 Protein_2094 polyprenyl synthetase family protein -
  P5638_RS10900 (P5638_10900) dxs 2140094..2141995 (+) 1902 WP_024428010.1 1-deoxy-D-xylulose-5-phosphate synthase -
  P5638_RS10905 (P5638_10905) - 2141992..2142846 (+) 855 WP_025092991.1 TlyA family RNA methyltransferase -
  P5638_RS10910 (P5638_10910) argR 2143010..2143459 (+) 450 WP_024422938.1 transcriptional regulator ArgR -
  P5638_RS10915 (P5638_10915) recN 2143493..2145226 (+) 1734 WP_025092992.1 DNA repair protein RecN Machinery gene
  P5638_RS10920 (P5638_10920) spoIVB 2145427..2146704 (+) 1278 WP_277721863.1 SpoIVB peptidase -
  P5638_RS10925 (P5638_10925) spo0A 2146989..2147792 (+) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  P5638_RS10930 (P5638_10930) - 2148249..2149349 (+) 1101 WP_034622321.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64683.50 Da        Isoelectric Point: 4.7728

>NTDB_id=806512 P5638_RS10915 WP_025092992.1 2143493..2145226(+) (recN) [Bacillus safensis strain PRO114]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEDIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=806512 P5638_RS10915 WP_025092992.1 2143493..2145226(+) (recN) [Bacillus safensis strain PRO114]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGATCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCACCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAATAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGACATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCCCAAAAGCTAAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AGGAAGAACGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCGTATAACGCTCTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGTGAGCTTGAGCAGGTGTCTGAGATCAACGATGATTTGAAAAAGCT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGCTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCCCTGCTCGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATCCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTGCAGCTCGGGAAAAATGGAATCGACCA
AGCCCAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCATGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WLT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757