Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P5638_RS10730 Genome accession   NZ_CP120599
Coordinates   2112723..2113058 (-) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain PRO114     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2107723..2118058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS10680 (P5638_10680) comGC 2107933..2108226 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  P5638_RS10685 (P5638_10685) comGD 2108219..2108665 (+) 447 WP_034621605.1 competence type IV pilus minor pilin ComGD -
  P5638_RS10690 (P5638_10690) comGE 2108649..2108963 (+) 315 WP_034621606.1 competence type IV pilus minor pilin ComGE -
  P5638_RS10695 (P5638_10695) comGF 2108950..2109402 (+) 453 WP_277721854.1 competence type IV pilus minor pilin ComGF -
  P5638_RS10700 (P5638_10700) comGG 2109399..2109782 (+) 384 WP_277721855.1 competence type IV pilus minor pilin ComGG -
  P5638_RS10705 (P5638_10705) - 2109842..2110036 (+) 195 WP_056767455.1 YqzE family protein -
  P5638_RS10710 (P5638_10710) - 2110071..2110349 (-) 279 WP_171464609.1 DUF3889 domain-containing protein -
  P5638_RS10715 (P5638_10715) tapA 2110649..2111176 (+) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  P5638_RS10720 (P5638_10720) - 2111228..2111800 (+) 573 WP_024422971.1 signal peptidase I -
  P5638_RS10725 (P5638_10725) - 2111855..2112655 (+) 801 WP_098677431.1 TasA family protein -
  P5638_RS10730 (P5638_10730) sinR 2112723..2113058 (-) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  P5638_RS10735 (P5638_10735) - 2113092..2113256 (-) 165 WP_073206269.1 anti-repressor SinI family protein -
  P5638_RS10740 (P5638_10740) - 2113438..2114235 (-) 798 WP_024427993.1 YqhG family protein -
  P5638_RS10745 (P5638_10745) - 2114250..2115920 (-) 1671 WP_024427994.1 SNF2-related protein -
  P5638_RS10750 (P5638_10750) gcvT 2116482..2117579 (+) 1098 WP_135032084.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=806511 P5638_RS10730 WP_024422969.1 2112723..2113058(-) (sinR) [Bacillus safensis strain PRO114]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=806511 P5638_RS10730 WP_024422969.1 2112723..2113058(-) (sinR) [Bacillus safensis strain PRO114]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946