Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P5638_RS07425 Genome accession   NZ_CP120599
Coordinates   1495350..1495991 (+) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain PRO114     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490350..1500991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS07400 (P5638_07400) - 1490736..1491092 (-) 357 WP_277722845.1 inner spore coat protein -
  P5638_RS07405 (P5638_07405) degQ 1491598..1491738 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  P5638_RS07410 (P5638_07410) - 1491890..1492813 (+) 924 WP_277722846.1 polyprenyl synthetase family protein -
  P5638_RS07415 (P5638_07415) comX 1492791..1492964 (+) 174 WP_060698182.1 competence pheromone ComX -
  P5638_RS07420 (P5638_07420) comP 1492978..1495269 (+) 2292 WP_224426590.1 ATP-binding protein Regulator
  P5638_RS07425 (P5638_07425) comA 1495350..1495991 (+) 642 WP_024423322.1 response regulator transcription factor Regulator
  P5638_RS07430 (P5638_07430) - 1496015..1496404 (+) 390 WP_024423321.1 hotdog fold thioesterase -
  P5638_RS07435 (P5638_07435) mnhG 1496497..1496871 (-) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  P5638_RS07440 (P5638_07440) - 1496855..1497136 (-) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  P5638_RS07445 (P5638_07445) - 1497136..1497615 (-) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  P5638_RS07450 (P5638_07450) - 1497622..1499100 (-) 1479 WP_277722847.1 Na+/H+ antiporter subunit D -
  P5638_RS07455 (P5638_07455) - 1499093..1499434 (-) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  P5638_RS07460 (P5638_07460) - 1499434..1499865 (-) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=806501 P5638_RS07425 WP_024423322.1 1495350..1495991(+) (comA) [Bacillus safensis strain PRO114]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=806501 P5638_RS07425 WP_024423322.1 1495350..1495991(+) (comA) [Bacillus safensis strain PRO114]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAGTACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723