Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   P5622_RS05180 Genome accession   NZ_CP120598
Coordinates   988092..988211 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain PRO115     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 983092..993211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS05160 (P5622_05160) pbpG 983448..985523 (-) 2076 WP_003227540.1 transglycosylase domain-containing protein -
  P5622_RS05165 (P5622_05165) speE 985725..986555 (+) 831 WP_003227543.1 spermidine synthase -
  P5622_RS05170 (P5622_05170) speB 986616..987488 (+) 873 WP_003227545.1 agmatinase -
  P5622_RS05175 (P5622_05175) ywhH 987520..987993 (-) 474 WP_003227547.1 YbaK/EbsC family protein -
  P5622_RS05180 (P5622_05180) phrF 988092..988211 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  P5622_RS05185 (P5622_05185) rapF 988195..989340 (-) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  P5622_RS21570 - 989343..989573 (+) 231 WP_009968328.1 hypothetical protein -
  P5622_RS05190 (P5622_05190) ywhK 989570..990925 (+) 1356 WP_003227552.1 YncE family protein -
  P5622_RS05195 (P5622_05195) ywhL 990964..992340 (+) 1377 WP_003244415.1 YncE family protein -
  P5622_RS05200 (P5622_05200) albG 992346..993047 (-) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=806417 P5622_RS05180 WP_009968329.1 988092..988211(-) (phrF) [Bacillus subtilis strain PRO115]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=806417 P5622_RS05180 WP_009968329.1 988092..988211(-) (phrF) [Bacillus subtilis strain PRO115]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487