Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   P5663_RS16385 Genome accession   NZ_CP120590
Coordinates   3071162..3072112 (-) Length   316 a.a.
NCBI ID   WP_277716729.1    Uniprot ID   -
Organism   Priestia flexa strain PRO116     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3066162..3077112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5663_RS16360 (P5663_16370) - 3067430..3067900 (-) 471 WP_078989961.1 GNAT family N-acetyltransferase -
  P5663_RS16365 (P5663_16375) - 3068061..3068336 (+) 276 WP_025907150.1 DUF4282 domain-containing protein -
  P5663_RS16370 (P5663_16380) - 3068373..3069326 (-) 954 WP_277716728.1 siderophore ABC transporter substrate-binding protein -
  P5663_RS16375 (P5663_16385) - 3069461..3070222 (-) 762 WP_025907148.1 ABC transporter ATP-binding protein -
  P5663_RS16380 (P5663_16390) - 3070219..3071169 (-) 951 WP_061785365.1 iron chelate uptake ABC transporter family permease subunit -
  P5663_RS16385 (P5663_16395) ceuB 3071162..3072112 (-) 951 WP_277716729.1 ABC transporter permease Machinery gene
  P5663_RS16390 (P5663_16400) - 3072372..3072812 (-) 441 WP_138117178.1 MarR family winged helix-turn-helix transcriptional regulator -
  P5663_RS16395 (P5663_16405) - 3072948..3073241 (+) 294 WP_277716730.1 putative quinol monooxygenase -
  P5663_RS16400 (P5663_16410) - 3073367..3073669 (+) 303 WP_061785369.1 DUF6509 family protein -
  P5663_RS16410 (P5663_16420) - 3074186..3075088 (+) 903 WP_076513268.1 AEC family transporter -
  P5663_RS16415 (P5663_16425) - 3075419..3076033 (-) 615 WP_025907132.1 acetate uptake transporter -
  P5663_RS16420 (P5663_16430) - 3076152..3076355 (-) 204 WP_025907130.1 cold-shock protein -
  P5663_RS16425 (P5663_16435) - 3076691..3076861 (-) 171 WP_176031377.1 hypothetical protein -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34658.97 Da        Isoelectric Point: 9.5760

>NTDB_id=806387 P5663_RS16385 WP_277716729.1 3071162..3072112(-) (ceuB) [Priestia flexa strain PRO116]
MKIRYLIILLFLLSLISLFIGVSPVNIYGVLSFDQEQIQVLLISRFPRLISIIIAGVSLSICGLIMQQLTRNKFVSPTTA
GTMDSARLGVLVALMLFTSASPIQKMLVAFVFALIGTFIFMKILDSIKVKDRIFIPLVGLMFGNVIGSITTFFAYKNDLI
QSIGSWLQGDFSTIISGQYELIFLSVPLMIIAYLYANKFTIAGMGEDFATNLGLPFKQVVNIGLVIVALVSSIVLLTVGM
IPFLGLIIPNIVSIYAGDHLKNSLPQTALLGAVFVLTCDILGRVIIYPYEISIGMMVGVIGSGIFLYMLIRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=806387 P5663_RS16385 WP_277716729.1 3071162..3072112(-) (ceuB) [Priestia flexa strain PRO116]
GTGAAAATTAGGTATCTTATTATTTTACTATTTTTATTATCGCTTATTTCGTTATTTATCGGCGTATCACCAGTAAATAT
TTATGGGGTCTTATCCTTTGATCAAGAGCAAATTCAAGTGCTACTAATTAGTCGTTTTCCACGATTGATTAGCATCATTA
TTGCTGGAGTAAGCTTAAGTATATGTGGATTGATTATGCAGCAGCTGACGAGAAATAAATTTGTTTCTCCGACGACCGCT
GGAACCATGGATTCTGCACGCTTAGGTGTTTTGGTAGCATTGATGTTATTCACATCAGCTAGTCCAATTCAAAAAATGTT
GGTTGCATTTGTTTTCGCTTTAATTGGAACCTTCATCTTTATGAAGATTTTAGATTCTATCAAAGTAAAAGATCGAATTT
TTATTCCTCTTGTTGGTTTGATGTTTGGTAATGTCATTGGTTCCATAACGACATTTTTTGCTTATAAAAATGATTTGATT
CAAAGCATTGGCTCTTGGTTGCAAGGTGATTTCTCTACCATTATTTCAGGACAATATGAGTTAATCTTTTTAAGTGTTCC
ACTGATGATTATTGCCTACTTGTATGCTAATAAATTTACGATTGCAGGAATGGGAGAGGACTTTGCTACCAATCTAGGGT
TACCATTTAAGCAGGTTGTGAACATTGGGTTAGTCATCGTAGCACTTGTGTCATCTATCGTACTATTAACGGTTGGAATG
ATTCCTTTTTTAGGATTAATCATTCCGAATATTGTGTCAATATATGCTGGAGATCATTTGAAAAACAGTCTTCCGCAAAC
AGCTTTGCTTGGAGCGGTTTTTGTACTGACTTGTGATATTTTAGGACGAGTTATCATTTATCCATACGAGATTTCCATTG
GTATGATGGTTGGCGTCATTGGTAGTGGGATATTCTTGTACATGTTGATTAGGAGAAAGGCTTATGAGTAA

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.899

100

0.519