Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P5663_RS03750 Genome accession   NZ_CP120590
Coordinates   725787..726194 (+) Length   135 a.a.
NCBI ID   WP_081801858.1    Uniprot ID   -
Organism   Priestia flexa strain PRO116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 720787..731194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5663_RS03720 (P5663_03720) - 720832..721137 (+) 306 WP_025909618.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  P5663_RS03725 (P5663_03725) fliS 721185..721610 (+) 426 WP_235932360.1 flagellar export chaperone FliS -
  P5663_RS03730 (P5663_03730) - 721627..722448 (+) 822 WP_025909620.1 flagellin -
  P5663_RS03735 (P5663_03735) - 722530..722967 (+) 438 WP_277717203.1 YaaR family protein -
  P5663_RS03740 (P5663_03740) - 723084..723929 (+) 846 WP_062686858.1 DegV family protein -
  P5663_RS03745 (P5663_03745) comFA 724015..725502 (+) 1488 WP_277717204.1 DEAD/DEAH box helicase Machinery gene
  P5663_RS03750 (P5663_03750) comFC 725787..726194 (+) 408 WP_081801858.1 ComF family protein Machinery gene
  P5663_RS03755 (P5663_03755) - 726252..726653 (+) 402 WP_061786276.1 TIGR03826 family flagellar region protein -
  P5663_RS03760 (P5663_03760) flgM 726867..727124 (+) 258 WP_025909626.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5663_RS03765 (P5663_03765) - 727140..727580 (+) 441 WP_025909627.1 flagellar protein FlgN -
  P5663_RS03770 (P5663_03770) flgK 727601..729115 (+) 1515 WP_277717205.1 flagellar hook-associated protein FlgK -
  P5663_RS03775 (P5663_03775) flgL 729118..729999 (+) 882 WP_076512304.1 flagellar hook-associated protein FlgL -
  P5663_RS03780 (P5663_03780) - 730044..730460 (+) 417 WP_277717206.1 DUF6470 family protein -
  P5663_RS03785 (P5663_03785) fliW 730464..730892 (+) 429 WP_100346606.1 flagellar assembly protein FliW -
  P5663_RS03790 (P5663_03790) csrA 730906..731145 (+) 240 WP_025909632.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15724.06 Da        Isoelectric Point: 6.8722

>NTDB_id=806362 P5663_RS03750 WP_081801858.1 725787..726194(+) (comFC) [Priestia flexa strain PRO116]
MFKYRGDYELHKIFTDDFAQLYKVYSPENPVLVPIPLSKERMYERGFNQAEALASLLPAEVAYPLTRKHTEKQAKKTREE
RLQNHRVFELVDPELVTNRNVILIDDLYTTGVTLHEAALCLKDVAAAIYSFTIYR

Nucleotide


Download         Length: 408 bp        

>NTDB_id=806362 P5663_RS03750 WP_081801858.1 725787..726194(+) (comFC) [Priestia flexa strain PRO116]
TTGTTTAAATACCGAGGTGACTACGAACTTCATAAAATATTTACTGACGATTTCGCTCAGCTTTATAAGGTATATAGTCC
TGAGAACCCCGTACTGGTTCCCATCCCTTTAAGCAAGGAGCGAATGTATGAGCGTGGGTTTAATCAAGCGGAAGCGTTGG
CATCTTTACTCCCGGCAGAAGTAGCTTACCCTCTTACTCGTAAGCATACGGAGAAACAAGCGAAGAAAACGAGAGAAGAA
AGGCTACAAAACCATAGGGTGTTCGAGCTTGTGGATCCAGAGCTGGTTACAAACAGAAACGTCATTTTAATCGATGATTT
GTACACAACGGGCGTTACGTTACACGAAGCAGCGCTTTGTCTAAAAGATGTGGCGGCAGCAATCTATTCTTTTACAATTT
ACCGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(25-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

51.095

100

0.519
  comFC Latilactobacillus sakei subsp. sakei 23K

37.324

100

0.393
  comFC Lactococcus lactis subsp. cremoris KW2

37.5

100

0.378