Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P5663_RS03745 Genome accession   NZ_CP120590
Coordinates   724015..725502 (+) Length   495 a.a.
NCBI ID   WP_277717204.1    Uniprot ID   -
Organism   Priestia flexa strain PRO116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 719015..730502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5663_RS03720 (P5663_03720) - 720832..721137 (+) 306 WP_025909618.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  P5663_RS03725 (P5663_03725) fliS 721185..721610 (+) 426 WP_235932360.1 flagellar export chaperone FliS -
  P5663_RS03730 (P5663_03730) - 721627..722448 (+) 822 WP_025909620.1 flagellin -
  P5663_RS03735 (P5663_03735) - 722530..722967 (+) 438 WP_277717203.1 YaaR family protein -
  P5663_RS03740 (P5663_03740) - 723084..723929 (+) 846 WP_062686858.1 DegV family protein -
  P5663_RS03745 (P5663_03745) comFA 724015..725502 (+) 1488 WP_277717204.1 DEAD/DEAH box helicase Machinery gene
  P5663_RS03750 (P5663_03750) comFC 725787..726194 (+) 408 WP_081801858.1 ComF family protein Machinery gene
  P5663_RS03755 (P5663_03755) - 726252..726653 (+) 402 WP_061786276.1 TIGR03826 family flagellar region protein -
  P5663_RS03760 (P5663_03760) flgM 726867..727124 (+) 258 WP_025909626.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5663_RS03765 (P5663_03765) - 727140..727580 (+) 441 WP_025909627.1 flagellar protein FlgN -
  P5663_RS03770 (P5663_03770) flgK 727601..729115 (+) 1515 WP_277717205.1 flagellar hook-associated protein FlgK -
  P5663_RS03775 (P5663_03775) flgL 729118..729999 (+) 882 WP_076512304.1 flagellar hook-associated protein FlgL -
  P5663_RS03780 (P5663_03780) - 730044..730460 (+) 417 WP_277717206.1 DUF6470 family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55791.64 Da        Isoelectric Point: 9.0553

>NTDB_id=806361 P5663_RS03745 WP_277717204.1 724015..725502(+) (comFA) [Priestia flexa strain PRO116]
MFLRFILHDNQLVPNGSQEAQAISRLPEWHTPAVNPTFSFNASLQQFLVGKQLLPDELASFSFSTLHEHYEQGYIHYQKS
IVKKDVMTCMRCGNQQQHLFASFHCGRCYSTCTYCRACIGMGRVSECTPLIAWKGPPLREVSSPTLTWKGKLSPAQQTAS
SQMVEAVHSKQELLVWAVCGAGKTEVLFEGISKALALGKSVCVATPRTDVVLELHPRLQQAFQELEVVALYGGSADKGKH
SSLILTTTHQLLRYYEAFDVMIIDEVDAFPYSAEPMLQYAAHKARKAESTLIYLTATPSENLKQQVKENKLAAVKIPARY
HRYPIPIPRFVWCGNWQKRLVKKKLPFSISSWIKQRVCDDKQCFVFVPKVKWVQPVVELIQQLTPSVAGVHAEDKERKEK
VKAFREQQYTILVTTTILERGVTVPNIDVAVVGAENEIFTESALVQISGRVGRSANFPTGDVVFFHYGQTVEMKKAKKHM
VDMNDMAKKQGLIQI

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=806361 P5663_RS03745 WP_277717204.1 724015..725502(+) (comFA) [Priestia flexa strain PRO116]
ATGTTTTTGCGATTTATCCTACATGACAATCAGTTAGTACCGAATGGTTCACAGGAAGCGCAGGCCATTTCGCGGCTTCC
TGAATGGCATACACCCGCTGTTAACCCTACATTTTCATTTAATGCAAGCCTCCAGCAATTCCTCGTTGGCAAGCAACTAC
TCCCTGATGAACTAGCTTCATTTTCTTTTTCTACTCTTCATGAACATTACGAACAAGGCTATATCCACTATCAAAAGTCA
ATTGTGAAAAAAGACGTGATGACCTGCATGCGCTGTGGAAATCAGCAGCAGCACTTATTTGCTTCGTTTCACTGTGGTCG
CTGTTACAGCACATGTACGTATTGCCGTGCCTGCATTGGGATGGGGCGGGTATCGGAATGTACGCCTCTTATCGCGTGGA
AAGGGCCTCCTTTACGTGAGGTTTCTTCGCCAACTCTTACGTGGAAAGGAAAGCTCTCTCCTGCTCAGCAAACGGCTTCT
AGCCAAATGGTAGAAGCCGTACATTCAAAGCAAGAGCTGCTCGTGTGGGCCGTTTGTGGAGCTGGAAAAACGGAAGTTCT
CTTTGAAGGTATTTCAAAAGCGCTTGCTTTGGGTAAATCGGTATGCGTCGCCACGCCGAGAACGGACGTAGTCCTGGAGC
TTCATCCAAGGCTTCAACAAGCGTTTCAAGAGTTGGAAGTAGTGGCTCTTTACGGCGGAAGTGCTGATAAAGGGAAGCAT
TCTTCTCTGATCCTCACAACTACTCATCAGCTTTTGCGTTACTATGAAGCATTTGACGTCATGATCATTGACGAAGTAGA
CGCATTTCCTTATTCAGCAGAACCAATGTTGCAGTATGCTGCCCACAAAGCTCGTAAAGCAGAATCAACCCTTATTTACT
TAACAGCAACTCCCAGTGAAAATCTTAAGCAACAGGTTAAAGAAAATAAGCTAGCAGCTGTCAAAATACCGGCTCGCTAT
CACCGCTATCCCATTCCGATACCTCGTTTTGTATGGTGTGGCAACTGGCAGAAGAGGCTTGTTAAAAAGAAGTTACCTTT
CTCTATATCAAGCTGGATCAAGCAGCGAGTGTGTGATGATAAGCAGTGCTTTGTGTTTGTACCAAAGGTCAAATGGGTTC
AGCCCGTTGTAGAACTCATTCAACAGCTAACGCCAAGCGTGGCTGGGGTGCACGCAGAAGATAAGGAGCGAAAAGAAAAG
GTAAAAGCTTTTCGTGAGCAGCAGTATACCATTTTGGTTACAACAACCATTTTAGAACGAGGGGTGACTGTCCCTAATAT
TGATGTCGCTGTAGTAGGTGCTGAAAATGAAATTTTCACTGAAAGCGCACTTGTGCAAATTTCAGGCCGAGTTGGTAGAA
GCGCAAACTTTCCAACAGGAGACGTGGTCTTCTTTCACTATGGGCAAACGGTTGAAATGAAAAAAGCGAAAAAGCATATG
GTAGATATGAACGATATGGCAAAAAAACAAGGTCTAATTCAGATATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(359-454)

Type III restriction enzyme, res subunit (ResIII)

(151-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.298

92.323

0.483