Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   P5628_RS19345 Genome accession   NZ_CP120577
Coordinates   3723622..3723741 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain PRO53     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3718622..3728741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS19325 (P5628_19325) albG 3718786..3719487 (+) 702 WP_046160959.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  P5628_RS19330 (P5628_19330) ywhL 3719493..3720869 (-) 1377 WP_277709116.1 YncE family protein -
  P5628_RS19335 (P5628_19335) ywhK 3720908..3722263 (-) 1356 WP_038829813.1 YncE family protein -
  P5628_RS21340 - 3722260..3722490 (-) 231 Protein_3754 hypothetical protein -
  P5628_RS19340 (P5628_19340) rapF 3722493..3723638 (+) 1146 WP_038829812.1 response regulator aspartate phosphatase RapF Regulator
  P5628_RS19345 (P5628_19345) phrF 3723622..3723741 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  P5628_RS19350 (P5628_19350) ywhH 3723839..3724310 (+) 472 Protein_3757 YbaK/EbsC family protein -
  P5628_RS19355 (P5628_19355) speB 3724341..3725213 (-) 873 WP_003227545.1 agmatinase -
  P5628_RS19360 (P5628_19360) speE 3725274..3726104 (-) 831 WP_003227543.1 spermidine synthase -
  P5628_RS19365 (P5628_19365) pbpG 3726306..3728381 (+) 2076 WP_033883392.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=806340 P5628_RS19345 WP_009968329.1 3723622..3723741(+) (phrF) [Bacillus subtilis strain PRO53]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=806340 P5628_RS19345 WP_009968329.1 3723622..3723741(+) (phrF) [Bacillus subtilis strain PRO53]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487