Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   P5628_RS02050 Genome accession   NZ_CP120577
Coordinates   404906..406054 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis strain PRO53     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 399906..411054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS02030 (P5628_02030) yclH 400287..400967 (-) 681 WP_014662766.1 ABC transporter ATP-binding protein -
  P5628_RS02035 (P5628_02035) yclI 400983..402443 (-) 1461 WP_277709253.1 ABC transporter permease -
  P5628_RS02040 (P5628_02040) yclJ 402652..403335 (+) 684 WP_277709254.1 two-component system response regulator YclJ -
  P5628_RS02045 (P5628_02045) yclK 403322..404743 (+) 1422 WP_134818942.1 two-component system sensor histidine kinase YclK -
  P5628_RS02050 (P5628_02050) rapC 404906..406054 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  P5628_RS02055 (P5628_02055) phrC 406038..406160 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  P5628_RS02060 (P5628_02060) yczM 406260..406349 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  P5628_RS02065 (P5628_02065) yczN 406431..406544 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  P5628_RS02070 (P5628_02070) thrD 406698..408062 (-) 1365 WP_122895034.1 aspartate kinase -
  P5628_RS02075 (P5628_02075) ceuB 408447..409397 (+) 951 WP_014662773.1 petrobactin ABC transporter permease YclN Machinery gene
  P5628_RS02080 (P5628_02080) yclO 409390..410337 (+) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=806274 P5628_RS02050 WP_014475800.1 404906..406054(+) (rapC) [Bacillus subtilis strain PRO53]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=806274 P5628_RS02050 WP_014475800.1 404906..406054(+) (rapC) [Bacillus subtilis strain PRO53]
ATGAAGAGTGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTTGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568