Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P3L57_RS12330 Genome accession   NZ_CP120511
Coordinates   2504655..2504990 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. B28     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2499655..2509990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L57_RS12310 (P3L57_12310) gcvT 2500245..2501333 (-) 1089 WP_069487188.1 glycine cleavage system aminomethyltransferase GcvT -
  P3L57_RS12315 (P3L57_12315) - 2501777..2503450 (+) 1674 WP_059293610.1 SNF2-related protein -
  P3L57_RS12320 (P3L57_12320) - 2503470..2504264 (+) 795 WP_044154602.1 YqhG family protein -
  P3L57_RS12325 (P3L57_12325) sinI 2504448..2504621 (+) 174 WP_024122036.1 anti-repressor SinI family protein Regulator
  P3L57_RS12330 (P3L57_12330) sinR 2504655..2504990 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  P3L57_RS12335 (P3L57_12335) tasA 2505076..2505861 (-) 786 WP_059293609.1 biofilm matrix protein TasA -
  P3L57_RS12340 (P3L57_12340) - 2505926..2506510 (-) 585 WP_059293608.1 signal peptidase I -
  P3L57_RS12345 (P3L57_12345) tapA 2506482..2507243 (-) 762 WP_069487187.1 amyloid fiber anchoring/assembly protein TapA -
  P3L57_RS12350 (P3L57_12350) - 2507520..2507843 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  P3L57_RS12355 (P3L57_12355) - 2507886..2508065 (-) 180 WP_003236949.1 YqzE family protein -
  P3L57_RS12360 (P3L57_12360) comGG 2508137..2508511 (-) 375 WP_059335411.1 competence type IV pilus minor pilin ComGG Machinery gene
  P3L57_RS12365 (P3L57_12365) comGF 2508512..2508895 (-) 384 WP_175422400.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3L57_RS12370 (P3L57_12370) comGE 2508921..2509268 (-) 348 WP_069487185.1 competence type IV pilus minor pilin ComGE Machinery gene
  P3L57_RS12375 (P3L57_12375) comGD 2509252..2509683 (-) 432 WP_044154579.1 competence type IV pilus minor pilin ComGD Machinery gene
  P3L57_RS12380 (P3L57_12380) comGC 2509673..2509969 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=805928 P3L57_RS12330 WP_003226345.1 2504655..2504990(+) (sinR) [Bacillus sp. B28]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=805928 P3L57_RS12330 WP_003226345.1 2504655..2504990(+) (sinR) [Bacillus sp. B28]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAGTC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1