Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3T75_RS00015 Genome accession   NZ_CP120467
Coordinates   2865..3401 (-) Length   178 a.a.
NCBI ID   WP_206902936.1    Uniprot ID   -
Organism   Enterococcus montenegrensis strain CoE-012-22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1..8401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T75_RS00010 (P3T75_00010) rpsR 2605..2841 (-) 237 WP_206902937.1 30S ribosomal protein S18 -
  P3T75_RS00015 (P3T75_00015) ssb 2865..3401 (-) 537 WP_206902936.1 single-stranded DNA-binding protein Machinery gene
  P3T75_RS00020 (P3T75_00020) rpsF 3447..3746 (-) 300 WP_173101904.1 30S ribosomal protein S6 -
  P3T75_RS00025 (P3T75_00025) gyrA 4306..6804 (-) 2499 WP_407649847.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19483.08 Da        Isoelectric Point: 4.5673

>NTDB_id=805728 P3T75_RS00015 WP_206902936.1 2865..3401(-) (ssb) [Enterococcus montenegrensis strain CoE-012-22]
MINNVVLVGRLTKDPDLRYTGNGAAVATFTLAVNRNFTNQSGDREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRSANEQRQQSGGSTTTNGGGGFNNNYGGASQQNNFNQNQPSQNNGMPSFDRDTSD
PFGSDASTIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=805728 P3T75_RS00015 WP_206902936.1 2865..3401(-) (ssb) [Enterococcus montenegrensis strain CoE-012-22]
TTGATTAACAATGTCGTTTTAGTCGGTAGATTAACAAAAGATCCTGATTTGCGCTACACAGGCAATGGTGCTGCAGTTGC
GACTTTTACTCTAGCAGTAAATCGTAATTTCACGAACCAAAGCGGTGATCGCGAAGCAGATTTTATCAATTGTGTAATCT
GGCGTAAACCAGCCGAAACTTTAGCAAATTATGCCCGCAAAGGAACGCTGCTAGGAGTTACTGGCCGCATTCAAACTCGG
AATTATGAAAACCAACAAGGTCAACGTGTTTACGTGACTGAAGTGGTTGCTGAAAACTTCCAATTATTAGAATCACGTTC
TGCCAATGAACAACGTCAACAAAGTGGCGGTAGTACTACCACGAATGGCGGCGGTGGTTTCAACAATAATTATGGTGGTG
CCAGCCAACAAAACAATTTTAATCAAAACCAACCTTCTCAAAACAACGGAATGCCGAGTTTTGATCGCGACACTTCTGAT
CCATTCGGGTCTGACGCATCAACCATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.36

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.564

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

59.551

0.371