Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   P2T68_RS14615 Genome accession   NZ_CP120377
Coordinates   3152384..3154609 (+) Length   741 a.a.
NCBI ID   WP_227496811.1    Uniprot ID   -
Organism   Pseudomonas sp. G11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3147384..3159609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2T68_RS14600 (P2T68_14600) - 3149645..3150373 (+) 729 WP_102625480.1 response regulator transcription factor -
  P2T68_RS14605 (P2T68_14605) - 3150360..3151736 (+) 1377 WP_150055036.1 sensor histidine kinase -
  P2T68_RS14610 (P2T68_14610) - 3151733..3152248 (-) 516 WP_168233404.1 DUF2062 domain-containing protein -
  P2T68_RS14615 (P2T68_14615) comA 3152384..3154609 (+) 2226 WP_227496811.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P2T68_RS14620 (P2T68_14620) exbB 3154719..3155354 (+) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P2T68_RS14625 (P2T68_14625) - 3155351..3155779 (+) 429 WP_024076131.1 biopolymer transporter ExbD -
  P2T68_RS14630 (P2T68_14630) lpxK 3155779..3156789 (+) 1011 WP_069076496.1 tetraacyldisaccharide 4'-kinase -
  P2T68_RS14635 (P2T68_14635) - 3156814..3156999 (+) 186 WP_003174668.1 Trm112 family protein -
  P2T68_RS14640 (P2T68_14640) kdsB 3156996..3157760 (+) 765 WP_277379510.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P2T68_RS14645 (P2T68_14645) - 3157760..3158224 (+) 465 WP_024076128.1 low molecular weight protein-tyrosine-phosphatase -
  P2T68_RS14650 (P2T68_14650) murB 3158221..3159240 (+) 1020 WP_277379511.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80298.34 Da        Isoelectric Point: 10.5924

>NTDB_id=805297 P2T68_RS14615 WP_227496811.1 3152384..3154609(+) (comA) [Pseudomonas sp. G11]
MKTGMFALALGLLALRFLPALPPAAGVLAMCVLALMLLPFRSHPLAFFLLGLSWACISAQWALDDRLQPALDGQTRWVEG
RVTGLPQQTSTGVRFELTDGRSPKARLPKRIRVAWHGGPPVRSGERWRLAVTLKRPSGVLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VTLLARYGCWPPCWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLILEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGRWSAWQAWTRPQWLIAIGLFPLLLVLGLPISLSAPLANLFAVPWISLVVLPLAL
LGTVLVAVPFVGEGLLWLAGGALDGLFRALALLAGHLPAWIPAEVPMGYWLVSVAGAVLLLLPRGVPLRPMGWPMLLLAV
FPPREPVPHGQVEVVQLDVGQGQALVLRTRHHTLLYDAGPRSGEVDLGARVVLPSLRKLGVEVLDMMLLSHADADHAGGA
AAIARGLPIRRVVGGETRGLPAFLGTEPCVSGEQWEWDGVSFELWQWPDAISGNPKSCVLQVQAKGERMLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSRSSSSWPFVQRLAPTAVLISRGRGNAFGHPHPQVMERYRALGTQVYDSAEQGAVRVQL
GAFLPPTVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=805297 P2T68_RS14615 WP_227496811.1 3152384..3154609(+) (comA) [Pseudomonas sp. G11]
ATGAAGACAGGGATGTTCGCGCTCGCGCTGGGGCTGCTCGCCTTGCGTTTTTTACCCGCGTTGCCGCCTGCCGCGGGGGT
GTTGGCCATGTGCGTGCTGGCGTTGATGCTGCTGCCGTTTCGCAGCCACCCACTGGCGTTCTTTCTGCTGGGCTTGAGTT
GGGCGTGCATCAGCGCGCAGTGGGCGCTGGATGACCGCCTGCAACCGGCGCTCGATGGCCAGACGCGCTGGGTGGAGGGC
CGGGTGACCGGGTTGCCGCAGCAGACCAGCACGGGCGTGCGTTTCGAACTGACCGACGGCCGGTCCCCCAAGGCGCGTTT
ACCCAAGCGTATTCGCGTGGCCTGGCATGGCGGGCCACCGGTGCGCAGTGGGGAGCGCTGGCGCTTGGCCGTGACGCTCA
AGCGGCCATCCGGCGTGCTCAACTTCCATGGCTTTGATCATGAGGCCTGGCTGTTGGCCCAGCGCATCGGTGCCACCGGC
TCGGTGAAAGACGGTGAGCGTTTGGCGCCGGCGCGCAACGCTTGGCGCGACGCGGTCCGCCAACGACTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCCGGGCTGGCCGCCTTGGTGCTGGGCGATGGCTCGGGGCTGGCCGCCGAGGATTGGCGTGTGT
TGCAGGACACCGGTACGGTGCACCTGCTGGTGATATCCGGCCAGCATATTGGCTTGCTGGCGGGGTTGATCTATGGGCTG
GTCACACTGCTGGCGCGCTACGGTTGCTGGCCCCCCTGCTGGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCATTTGCTGC
CGCGCTGGGCTACGGCCTGCTTGCGGGGTTCGGAGTGCCGGTGCAAAGGGCCTGCGTGATGGTGGGGCTGGTATTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGCGCCTGGTGGCCATTGTTACTGGCATTTAATGGCGTGCTGATCCTTGAGCCTTTG
GCCAGCCTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCTGTCGCGGTATTGGTGCTGGCATTCGGTGGGCGTTTGGGGCG
GTGGAGCGCCTGGCAAGCCTGGACCCGTCCCCAGTGGTTGATCGCGATCGGCCTGTTTCCGCTGTTGCTGGTGCTGGGGT
TGCCCATCAGTCTCAGCGCGCCGTTGGCTAACCTGTTTGCCGTGCCATGGATCAGCCTGGTGGTGTTGCCCTTGGCATTG
TTGGGCACTGTGCTGGTGGCGGTGCCCTTTGTGGGGGAGGGGCTGTTATGGCTGGCGGGTGGGGCGCTGGATGGGTTGTT
CCGCGCCTTGGCGTTGCTGGCCGGGCACCTGCCGGCATGGATACCGGCCGAGGTGCCGATGGGCTATTGGCTGGTGAGCG
TCGCGGGTGCAGTGTTACTGCTGTTGCCCAGGGGCGTACCGTTACGACCGATGGGGTGGCCGATGCTGTTGTTGGCGGTG
TTTCCGCCGCGGGAGCCGGTGCCCCATGGGCAGGTTGAGGTGGTGCAACTGGATGTCGGTCAGGGGCAGGCGCTGGTGCT
GCGCACCCGTCATCACACCTTGCTCTACGATGCGGGTCCGCGCTCGGGGGAAGTCGATCTTGGCGCGCGTGTGGTATTGC
CGTCATTGAGAAAACTCGGGGTGGAGGTATTGGACATGATGCTGCTCAGCCACGCCGACGCCGACCATGCCGGCGGTGCG
GCGGCTATTGCCCGTGGGCTGCCGATCAGACGGGTAGTCGGAGGCGAAACACGAGGCTTGCCGGCGTTTCTCGGCACTGA
ACCCTGTGTCAGCGGTGAACAGTGGGAGTGGGATGGGGTGTCATTTGAACTGTGGCAGTGGCCAGATGCTATTAGTGGTA
ACCCGAAATCCTGTGTATTACAGGTCCAGGCCAAGGGTGAGCGCATGTTGCTCACGGGGGATATTGATCGCGCCGCCGAG
CGGGCTTTTCTTGCCTCGCCCTTGGCTGTGCGGACCGATTGGTTGCAGGCGCCCCATCATGGCAGCCGCAGTTCTTCGTC
CTGGCCCTTTGTGCAGCGGCTGGCGCCCACGGCGGTGCTGATTTCCAGGGGGCGAGGCAACGCGTTCGGCCACCCCCACC
CCCAGGTGATGGAACGCTACCGGGCACTGGGTACCCAGGTTTATGACAGTGCTGAACAAGGGGCTGTGCGTGTGCAATTG
GGGGCGTTCCTGCCACCGACTGTTGCGCGCAGTCAACGCCGTTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.083

97.031

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.842

100

0.379