Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P2T68_RS14620 Genome accession   NZ_CP120377
Coordinates   3154719..3155354 (+) Length   211 a.a.
NCBI ID   WP_024076132.1    Uniprot ID   A0AB36XW30
Organism   Pseudomonas sp. G11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3149719..3160354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2T68_RS14605 (P2T68_14605) - 3150360..3151736 (+) 1377 WP_150055036.1 sensor histidine kinase -
  P2T68_RS14610 (P2T68_14610) - 3151733..3152248 (-) 516 WP_168233404.1 DUF2062 domain-containing protein -
  P2T68_RS14615 (P2T68_14615) comA 3152384..3154609 (+) 2226 WP_227496811.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P2T68_RS14620 (P2T68_14620) exbB 3154719..3155354 (+) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P2T68_RS14625 (P2T68_14625) - 3155351..3155779 (+) 429 WP_024076131.1 biopolymer transporter ExbD -
  P2T68_RS14630 (P2T68_14630) lpxK 3155779..3156789 (+) 1011 WP_069076496.1 tetraacyldisaccharide 4'-kinase -
  P2T68_RS14635 (P2T68_14635) - 3156814..3156999 (+) 186 WP_003174668.1 Trm112 family protein -
  P2T68_RS14640 (P2T68_14640) kdsB 3156996..3157760 (+) 765 WP_277379510.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P2T68_RS14645 (P2T68_14645) - 3157760..3158224 (+) 465 WP_024076128.1 low molecular weight protein-tyrosine-phosphatase -
  P2T68_RS14650 (P2T68_14650) murB 3158221..3159240 (+) 1020 WP_277379511.1 UDP-N-acetylmuramate dehydrogenase -
  P2T68_RS14655 (P2T68_14655) - 3159315..3159986 (-) 672 WP_010209655.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22907.05 Da        Isoelectric Point: 7.4245

>NTDB_id=805298 P2T68_RS14620 WP_024076132.1 3154719..3155354(+) (exbB) [Pseudomonas sp. G11]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRAHSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=805298 P2T68_RS14620 WP_024076132.1 3154719..3155354(+) (exbB) [Pseudomonas sp. G11]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGCAAAAGCTCAAGGAGCTGCGCGCCCATTCACCGCTGGGTGAAATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCGGCTGCCCGCGTCATCCATGAGCTGGAGCGCTACAT
CAACGCCCTGGGCACCATCGCGGCCATGGCGCCGTTGCTCGGCCTGCTCGGCACGGTGTTGGGCATGATCGATATTTTCA
GCGCCTTCACGGGCTCCGGCATGACCACCAACGCTGCCGTGCTGGCCGGCGGTATTTCCAAGGCATTGATCACCACGGCC
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCATCGCTTCCTGCAGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858