Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P3U58_RS10645 Genome accession   NZ_CP120199
Coordinates   2272850..2274220 (-) Length   456 a.a.
NCBI ID   WP_015728606.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2267850..2279220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U58_RS10620 (P3U58_10620) cysE 2268015..2268680 (-) 666 WP_172425792.1 serine O-acetyltransferase -
  P3U58_RS10625 (P3U58_10625) gltX 2269068..2270522 (-) 1455 WP_037543943.1 glutamate--tRNA ligase -
  P3U58_RS10630 (P3U58_10630) ispF 2270599..2271078 (-) 480 WP_014614766.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  P3U58_RS10635 (P3U58_10635) ispD 2271071..2271769 (-) 699 WP_014614767.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  P3U58_RS10640 (P3U58_10640) - 2271770..2272831 (-) 1062 WP_014614768.1 PIN/TRAM domain-containing protein -
  P3U58_RS10645 (P3U58_10645) radA 2272850..2274220 (-) 1371 WP_015728606.1 DNA repair protein RadA Machinery gene
  P3U58_RS10650 (P3U58_10650) - 2274607..2275353 (-) 747 WP_015728605.1 ABC transporter permease -
  P3U58_RS10655 (P3U58_10655) - 2275340..2276044 (-) 705 WP_014614771.1 ABC transporter ATP-binding protein -
  P3U58_RS10660 (P3U58_10660) - 2276059..2277018 (-) 960 WP_233511255.1 hypothetical protein -
  P3U58_RS10665 (P3U58_10665) - 2277018..2277830 (-) 813 WP_323693814.1 SagB family peptide dehydrogenase -
  P3U58_RS10670 (P3U58_10670) - 2277850..2279070 (-) 1221 WP_065354621.1 YcaO-like family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50028.50 Da        Isoelectric Point: 7.0051

>NTDB_id=804597 P3U58_RS10645 WP_015728606.1 2272850..2274220(-) (radA) [Staphylococcus pseudintermedius strain Dog004]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGFDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEALKYALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=804597 P3U58_RS10645 WP_015728606.1 2272850..2274220(-) (radA) [Staphylococcus pseudintermedius strain Dog004]
GTGGCAAAAACGAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTACGGGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCCACATTGTT
ACTTCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTCAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCTAAACAAATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATCGCGGGGCCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGACCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACGTTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGATGCTTACATTAAGGTGGCAGGGGGCGTCAAACTCTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCTTCGATTGTTATATTGGCGAGGTTGGATTGACTGGTGAG
GTCCGCCGTGTTTCGCGCATTGAGCAACGTGTGCAAGAAGCAGCAAAATTGGGCTTTAAACGTGTGATTATCCCTAAAAA
CAATATTGGCGGATGGCACTTTCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.658
  radA Streptococcus pneumoniae Rx1

58.628

99.123

0.581
  radA Streptococcus pneumoniae D39

58.628

99.123

0.581
  radA Streptococcus pneumoniae R6

58.628

99.123

0.581
  radA Streptococcus pneumoniae TIGR4

58.628

99.123

0.581
  radA Streptococcus mitis NCTC 12261

58.628

99.123

0.581
  radA Streptococcus mitis SK321

58.628

99.123

0.581