Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P3U58_RS09515 Genome accession   NZ_CP120199
Coordinates   2045140..2047290 (-) Length   716 a.a.
NCBI ID   WP_323693761.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog004     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2040140..2052290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U58_RS09500 (P3U58_09500) recQ 2040288..2042069 (-) 1782 WP_065520664.1 DNA helicase RecQ -
  P3U58_RS09505 (P3U58_09505) - 2042079..2043956 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  P3U58_RS09510 (P3U58_09510) - 2044068..2044883 (+) 816 WP_096548109.1 ZIP family metal transporter -
  P3U58_RS09515 (P3U58_09515) comA 2045140..2047290 (-) 2151 WP_323693761.1 peptide cleavage/export ABC transporter Regulator
  P3U58_RS09520 (P3U58_09520) - 2047415..2047597 (-) 183 WP_301409423.1 hypothetical protein -
  P3U58_RS09525 (P3U58_09525) - 2047669..2047977 (-) 309 WP_323693762.1 DUF3884 family protein -
  P3U58_RS09530 (P3U58_09530) - 2048049..2049338 (-) 1290 WP_323693763.1 glycosyltransferase -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 81712.48 Da        Isoelectric Point: 9.7764

>NTDB_id=804595 P3U58_RS09515 WP_323693761.1 2045140..2047290(-) (comA) [Staphylococcus pseudintermedius strain Dog004]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDV
QYPFIVHIKKNNNHFHYYVVIRCDKKYIYIADPDPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDRVCLTSFIPL
LLKEKRLIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSIN
ILSPYIKHLFRLPITFFETRRAGDILSRLNDANSITDALASTMISLFLDVTIVVGISIFLYYQSTILFVLILIIIPIYAV
IVFAFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKIFLLNKLNIKQNVLKKVVQL
ILNVSILWVGANLVIDNQISIGTLLVFNSLVFYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQN
SSKLIFSNISYGYGYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLRQQI
IYIPQQTYIFNGTILENLLLGVAKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNS
SILIMDEATSNIDILTERKIINNLMVLNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=804595 P3U58_RS09515 WP_323693761.1 2045140..2047290(-) (comA) [Staphylococcus pseudintermedius strain Dog004]
ATGAAATTTTCAAAACGATTTTACCGTGCACAAGTAGATTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTA
CAGTATCCTTTTATCGTTCATATTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTA
TATCTATATAGCTGACCCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTGGAG
TTACAATATTATTAAAACCTACATCTTTATATAAACCTATAAAGCAAGATAGAGTTTGTTTAACTTCTTTTATACCTTTA
TTATTAAAAGAAAAAAGATTGATTATAAAAATAATAATCATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATA
TTTTATGAAGTCAATTATTGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTCAATGGCTTTAATTG
CTTCTTACATTATGCAACAAATTCTTAGTTATTTGCAAAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAAT
ATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGAAGAGCAGGAGACATACTATC
AAGACTTAATGATGCAAATTCAATTACTGATGCTTTAGCTAGTACCATGATATCATTGTTTTTAGATGTTACAATAGTAG
TTGGAATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTA
ATTGTTTTTGCTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTT
GATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATT
TTTCGAATTATTACGAAAAAATATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAATTA
ATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTT
TAATTCATTAGTGTTTTACTTTATGAACCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTTG
CTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAAC
TCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTTACAGATATTAATATAACAAT
AGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAAATGATGGTTAGTTTTT
TTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATT
ATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGCTAAAGAGGTTAC
GCAAAAAGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTG
TATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCT
TCTATATTGATAATGGATGAAGCAACAAGTAATATTGATATACTTACGGAGAGAAAAATTATTAATAATTTGATGGTGTT
AAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAA
AAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(169-437)

Peptidase C39 family (Peptidase_C39)

(8-141)

ABC transporter (ABC_tran)

(500-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

53.492

100

0.535
  comA Streptococcus mitis SK321

53.352

100

0.534
  comA Streptococcus mitis NCTC 12261

53.212

100

0.532
  comA Streptococcus pneumoniae R6

52.793

100

0.528
  comA Streptococcus pneumoniae Rx1

52.793

100

0.528
  comA Streptococcus pneumoniae D39

52.793

100

0.528
  comA Streptococcus pneumoniae TIGR4

52.514

100

0.525
  comA/nlmT Streptococcus mutans UA159

49.028

100

0.493