Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RKV28_RS09075 Genome accession   NZ_CP134534
Coordinates   1824061..1824663 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain KNIH_5618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819061..1829663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV28_RS09055 yajC 1820557..1820817 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  RKV28_RS09060 tgt 1820836..1821975 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  RKV28_RS09065 queA 1821998..1823023 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RKV28_RS09070 ruvB 1823025..1824029 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RKV28_RS09075 ruvA 1824061..1824663 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  RKV28_RS09080 - 1824677..1825132 (-) 456 WP_000368902.1 ACT domain-containing protein -
  RKV28_RS09085 obgE 1825145..1826437 (-) 1293 WP_000496100.1 GTPase ObgE -
  RKV28_RS09090 rpmA 1826791..1827075 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  RKV28_RS09095 - 1827087..1827407 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  RKV28_RS09100 rplU 1827413..1827721 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  RKV28_RS09105 mreD 1827957..1828487 (-) 531 WP_044417372.1 rod shape-determining protein MreD -
  RKV28_RS09110 mreC 1828487..1829329 (-) 843 WP_042109203.1 rod shape-determining protein MreC -
  RKV28_RS09115 - 1829528..1829647 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=804473 RKV28_RS09075 WP_000271550.1 1824061..1824663(-) (ruvA) [Staphylococcus aureus strain KNIH_5618]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=804473 RKV28_RS09075 WP_000271550.1 1824061..1824663(-) (ruvA) [Staphylococcus aureus strain KNIH_5618]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43