Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P3T97_RS07000 Genome accession   NZ_CP120185
Coordinates   1403248..1404150 (+) Length   300 a.a.
NCBI ID   WP_191835610.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog013     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398248..1409150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T97_RS06960 (P3T97_06960) - 1398333..1398887 (+) 555 WP_126477513.1 5-formyltetrahydrofolate cyclo-ligase -
  P3T97_RS06965 (P3T97_06965) - 1398888..1400336 (+) 1449 WP_191835611.1 rhomboid family protein -
  P3T97_RS06970 (P3T97_06970) - 1400341..1400532 (+) 192 WP_078099923.1 YqgQ family protein -
  P3T97_RS06975 (P3T97_06975) - 1400529..1401500 (+) 972 WP_126477511.1 ROK family glucokinase -
  P3T97_RS06980 (P3T97_06980) - 1401500..1401814 (+) 315 WP_048539720.1 MTH1187 family thiamine-binding protein -
  P3T97_RS06985 (P3T97_06985) - 1401844..1402083 (-) 240 WP_016911885.1 DUF2759 domain-containing protein -
  P3T97_RS06990 (P3T97_06990) - 1402181..1402813 (+) 633 WP_126477510.1 MBL fold metallo-hydrolase -
  P3T97_RS06995 (P3T97_06995) - 1402846..1403094 (-) 249 WP_025904960.1 DUF2626 family protein -
  P3T97_RS07000 (P3T97_07000) comGA 1403248..1404150 (+) 903 WP_191835610.1 competence type IV pilus ATPase ComGA Machinery gene
  P3T97_RS07005 (P3T97_07005) comGB 1404140..1405180 (+) 1041 WP_126477508.1 competence type IV pilus assembly protein ComGB -
  P3T97_RS07010 (P3T97_07010) comGC 1405196..1405513 (+) 318 WP_037588275.1 competence type IV pilus major pilin ComGC Machinery gene
  P3T97_RS07015 (P3T97_07015) - 1405542..1405940 (+) 399 WP_239705348.1 prepilin-type cleavage/methylation domain-containing protein -
  P3T97_RS07020 (P3T97_07020) comGE 1405924..1406205 (+) 282 WP_126477507.1 competence type IV pilus minor pilin ComGE -
  P3T97_RS07025 (P3T97_07025) comGF 1406180..1406614 (+) 435 WP_191835609.1 competence type IV pilus minor pilin ComGF -
  P3T97_RS07030 (P3T97_07030) - 1406849..1407337 (+) 489 WP_037588260.1 shikimate kinase -
  P3T97_RS07035 (P3T97_07035) gcvT 1407530..1408618 (+) 1089 WP_323714513.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34417.38 Da        Isoelectric Point: 6.4273

>NTDB_id=804353 P3T97_RS07000 WP_191835610.1 1403248..1404150(+) (comGA) [Mammaliicoccus sciuri strain Dog013]
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNTPYDLNLDFKLYSRLLIYMKFIAHLDVSERNKAQSGQYLY
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSHGKLEDQSYIVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDVTAKQVIQASLSGHLVLSTMHASD
TIGAIHRLIELGVTVEQIKQGISCITNQRLVKKNDETRTLVMSYIFKDDIIKYMENDYET

Nucleotide


Download         Length: 903 bp        

>NTDB_id=804353 P3T97_RS07000 WP_191835610.1 1403248..1404150(+) (comGA) [Mammaliicoccus sciuri strain Dog013]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTTAATTCAAATGCGAGTGATATTCACTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTTCAAATGAGGATAAATGGCGATAATACACCTTATGATTTAAATCTAGACTTTAAATTGTATAGTA
GGCTACTCATTTATATGAAATTTATCGCGCATCTTGATGTAAGTGAACGTAATAAAGCACAAAGCGGTCAATATCTATAT
GAACATGACATTCATTATTACTTAAGAATTTCTACAATACCAATAAGTTTAGGAATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCACTCACATGGAAAATTAGAAGATCAATCATATATCGTTCTACAAAATAGAATGTATCAATCAG
AGGGGTTATTTCTATTTACGGGGCCAACAGGATCAGGTAAGACGACATTAATGTATGAATTGATGTATGCGTTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGATCCTGTAGAACAAACATTAAATGGCATTGTCCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCTATTTTAAGATGTGATCCTGACGTTATTATGATTGGGGAGATAA
GAGATGATGTTACTGCTAAGCAAGTTATTCAGGCAAGTTTAAGTGGTCATTTAGTTCTTTCAACTATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAATTGAACTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATCACGAA
CCAACGTCTTGTGAAGAAAAATGATGAAACAAGAACATTAGTTATGTCTTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

51.246

93.667

0.48
  comGA Staphylococcus aureus N315

51.246

93.667

0.48
  comGA Bacillus subtilis subsp. subtilis str. 168

40.942

92

0.377