Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3T97_RS06575 Genome accession   NZ_CP120185
Coordinates   1326040..1328430 (+) Length   796 a.a.
NCBI ID   WP_191835640.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1321040..1333430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T97_RS06555 (P3T97_06555) sal(A) 1321347..1322972 (+) 1626 WP_191835643.1 ABC-F type ribosomal protection protein Sal(A) -
  P3T97_RS06560 (P3T97_06560) - 1323032..1324180 (+) 1149 WP_191835642.1 cysteine desulfurase family protein -
  P3T97_RS06565 (P3T97_06565) mnmA 1324173..1325282 (+) 1110 WP_103360766.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3T97_RS06570 (P3T97_06570) - 1325369..1326037 (+) 669 WP_191835641.1 tetratricopeptide repeat protein -
  P3T97_RS06575 (P3T97_06575) recD2 1326040..1328430 (+) 2391 WP_191835640.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3T97_RS06580 (P3T97_06580) alaS 1328680..1331310 (+) 2631 WP_191835639.1 alanine--tRNA ligase -
  P3T97_RS06585 (P3T97_06585) - 1331378..1331647 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  P3T97_RS06590 (P3T97_06590) ruvX 1331640..1332068 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  P3T97_RS06595 (P3T97_06595) - 1332088..1332393 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90438.58 Da        Isoelectric Point: 4.5798

>NTDB_id=804351 P3T97_RS06575 WP_191835640.1 1326040..1328430(+) (recD2) [Mammaliicoccus sciuri strain Dog013]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKDETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVEEDTESETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=804351 P3T97_RS06575 WP_191835640.1 1326040..1328430(+) (recD2) [Mammaliicoccus sciuri strain Dog013]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTAACAAACCATCCAAAATACGGTAAACAACTACAAGCTGAA
ACATTTGAAAAAGAATTGCCACAAACAAAACAAGGTGTTATTCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTTGGTGAAGATGCACTTCAGAAAATTATAGATGACCCGGATGTCCTTAAAG
AAATACCTAAACTCAATAAGCAAAAAAGAGACACGATTGCAGAATCCATACGTGAAAATCAAGCCATTGAACGCATTATG
ATAAAACTTAATGAACTTGGATTCGGACCGAAACTCGCGATGGCAATTTATCAATTTTATAAAGATGAAACACTTAATAT
TATTAAGCAATCTCCTTATCGTTTAGTGATGGATATAAATGGTATAGGTTTTCAAAGAGCTGACCAAATAGCTGAACAAG
TTGGGATATCTAAAGATCATCATGATCGACTTGTAGCAGGTGTGAGTTACTTTTTAGACCAGCAATCATTACAGAATGGT
CACACATTTTTACCTGTTGATATTTTGGTCAACGGGGCGTATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAAATAAATGGTGTCATTATCGAAATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCAAAAAGTGTGCAAATTATTCATAGACTTTATCAACATCAAGATGAACTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGACAAAAATTAGCGTT
AGAAACAGCTATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACGACCGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACATGGTGTGAGTTTGAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTATTA
GCAGCACCGACTGGACGTGCAGCAAAGCGTTTAAGTGAATCAACTGGACTAGAAGCGATGACAATTCATAGATTAATTGG
ATGGAGTAAAGATACGCAACCGGATGATGTGTTAGATAATGACATACATGCTCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTACCAATTTTTAAGAGCAGTTCCTGATTATGCCCAAATCATATTTGTAGGGGATGAAGAT
CAATTACCATCTGTTGGTCCAGGTCAGATTTTTAAAGATTTGATTGATTCTAAAGTTATACCGAGAGTGAACTTAACAGA
AGTATATAGACAACAAGAAGGATCATCTATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATTAATG
AAAAACATCACGACCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTTCAAGGTGCT
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGCTAGCTCCAATATACCGAGGACCAGCTGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGTGATATTGAATATCGAGAAA
ATGATAAAGTACTACAACTTATTAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAC
AAAGCAGAAGAAAATGCACTTGGCAAAGATGTCGTCATTGTAGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCAGAATTCCCGATAGTCATCATGCCTA
TTGTCAGACAATACTTTAGAATGTTACAAAAGAACATTCTATATACTGGACTTACACGTGCGAAACAGTCGCTTGTTGTG
TGCGGTGAAGAACAAGCCTTTAACCAAGGTATTCAAACGCTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAAGAAGATACGGAGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.876

100

0.504