Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RKV27_RS05775 Genome accession   NZ_CP134533
Coordinates   1106381..1106983 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain KNIH_5844     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101381..1111983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS05745 mreD 1101772..1102302 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  RKV27_RS05750 rplU 1102664..1102972 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  RKV27_RS05755 - 1102978..1103298 (+) 321 WP_020978210.1 ribosomal-processing cysteine protease Prp -
  RKV27_RS05760 rpmA 1103310..1103594 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  RKV27_RS05765 obgE 1104607..1105899 (+) 1293 WP_000496103.1 GTPase ObgE -
  RKV27_RS05770 - 1105912..1106367 (+) 456 WP_000368902.1 ACT domain-containing protein -
  RKV27_RS05775 ruvA 1106381..1106983 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  RKV27_RS05780 ruvB 1107015..1108019 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RKV27_RS05785 queA 1108021..1109046 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RKV27_RS05790 tgt 1109069..1110208 (+) 1140 WP_001112049.1 tRNA guanosine(34) transglycosylase Tgt -
  RKV27_RS05795 yajC 1110227..1110487 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=804346 RKV27_RS05775 WP_000271547.1 1106381..1106983(+) (ruvA) [Staphylococcus aureus strain KNIH_5844]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=804346 RKV27_RS05775 WP_000271547.1 1106381..1106983(+) (ruvA) [Staphylococcus aureus strain KNIH_5844]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGCAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425