Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U05_RS12000 Genome accession   NZ_CP120179
Coordinates   2535187..2535693 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain Dog018     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2530187..2540693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U05_RS11975 (P3U05_11975) - 2531422..2533413 (+) 1992 WP_014614918.1 catalase -
  P3U05_RS11980 (P3U05_11980) - 2533627..2534001 (-) 375 WP_157980673.1 Abi family protein -
  P3U05_RS11985 (P3U05_11985) - 2533998..2534417 (-) 420 WP_242367479.1 Abi family protein -
  P3U05_RS11990 (P3U05_11990) - 2534458..2534700 (-) 243 WP_020220245.1 hypothetical protein -
  P3U05_RS11995 (P3U05_11995) rpsR 2534891..2535133 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  P3U05_RS12000 (P3U05_12000) ssbA 2535187..2535693 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  P3U05_RS12005 (P3U05_12005) rpsF 2535716..2536012 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  P3U05_RS12010 (P3U05_12010) sbi 2536349..2537839 (+) 1491 WP_311741848.1 Ig-binding surface protein Sbi/SpsK -
  P3U05_RS12015 (P3U05_12015) - 2537893..2538702 (-) 810 WP_037541946.1 ABC transporter permease subunit -
  P3U05_RS12020 (P3U05_12020) - 2538695..2539630 (-) 936 WP_311739211.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=804233 P3U05_RS12000 WP_014614920.1 2535187..2535693(-) (ssbA) [Staphylococcus pseudintermedius strain Dog018]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=804233 P3U05_RS12000 WP_014614920.1 2535187..2535693(-) (ssbA) [Staphylococcus pseudintermedius strain Dog018]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAGCAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381