Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RJD14_RS03375 Genome accession   NZ_CP134493
Coordinates   730543..732690 (-) Length   715 a.a.
NCBI ID   WP_311125081.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 725543..737690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS03355 (RJD14_03355) - 726066..726368 (-) 303 WP_311125078.1 hypothetical protein -
  RJD14_RS03360 (RJD14_03360) - 726499..727500 (-) 1002 WP_193480663.1 TerC/Alx family metal homeostasis membrane protein -
  RJD14_RS03365 (RJD14_03365) - 727729..729747 (-) 2019 WP_311125079.1 TerD family protein -
  RJD14_RS03370 (RJD14_03370) - 729825..730403 (-) 579 WP_311125080.1 TerD family protein -
  RJD14_RS03375 (RJD14_03375) uvrB 730543..732690 (-) 2148 WP_311125081.1 excinuclease ABC subunit UvrB Machinery gene
  RJD14_RS03380 (RJD14_03380) - 732731..733603 (-) 873 WP_311125082.1 MHYT domain-containing protein -
  RJD14_RS03385 (RJD14_03385) - 733891..734763 (+) 873 WP_311125083.1 glycerophosphodiester phosphodiesterase family protein -
  RJD14_RS03390 (RJD14_03390) - 734850..735404 (+) 555 WP_311125084.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RJD14_RS03395 (RJD14_03395) - 735419..735847 (-) 429 WP_311125085.1 VOC family protein -
  RJD14_RS03400 (RJD14_03400) - 735946..736854 (+) 909 WP_311125086.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 80383.01 Da        Isoelectric Point: 4.7681

>NTDB_id=804161 RJD14_RS03375 WP_311125081.1 730543..732690(-) (uvrB) [Streptomyces sp. CGMCC 4.1456]
MRPVSQIERTVAPFEVVSPYQPNGDQPTAIADLARRVQAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSVNEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGDEFDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELGERLSELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIDQTVYL
SATPGKYELSRGDGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTDKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQIAYNTEQGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRKGRKDGGGAKAPVPSLG
GKAAEGAKPAKGKGKATETVPTDRPAAELTEQIEELTTRMRTAAANLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=804161 RJD14_RS03375 WP_311125081.1 730543..732690(-) (uvrB) [Streptomyces sp. CGMCC 4.1456]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAACGGCGACCAGCC
GACGGCCATCGCCGATCTCGCCCGGCGCGTCCAGGCAGGCGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTTCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTGCTCCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTATCAGCC
CGAGGCGTACGTTCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGGTCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTGGTGGTGGCCTCGGTCTCCTGCATCTACGGCCTCGGTACGCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCAAGGTCGGCGACGAATTCGACCGGGACGAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCCTTCACCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACCCTCCATCCGCTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCGGCGTCCCACTACGTCGCAGGGCCAGAGCGCCTCGAGCGGGC
GGTCAACGACATCGAGAAGGAGCTGGGCGAGCGCCTCTCGGAACTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGCC
TCAGGATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCCTGCCCGGCTCCCCGCCCAACACCCTGCTGGACTACTTCCCGGACGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACGGTGCCCCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGACCAGACGGTCTACCTG
TCGGCGACCCCCGGAAAGTACGAGCTCTCCCGCGGGGACGGCGTCGTCGAGCAGATCATCCGCCCCACCGGCCTGGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGGACGCGCACCGACAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTGCTGCGTGAGCTGCGCGCCGGCGAGTACGACGTGCT
CGTCGGCATCAACCTCCTCAGGGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCCCTGATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCGGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGACGCCGGGAGAAGCAGATCGCGTACAACAC
CGAACAGGGCATCGACCCCCAGCCCCTCCGCAAGAAGATCAACGACATCGTCGCCCAGATCGCCCGCGAGGACGTCGACA
CCGAGCAGCTGCTCGGCTCGGGCTACCGCAAGGGGCGCAAGGACGGCGGGGGCGCCAAGGCGCCCGTGCCCTCCCTGGGC
GGCAAGGCCGCCGAGGGGGCCAAGCCCGCCAAGGGCAAGGGCAAGGCCACGGAGACGGTACCGACCGACCGCCCCGCCGC
CGAACTCACCGAGCAGATCGAGGAGCTCACCACCCGCATGCGGACCGCAGCCGCGAACCTCCAGTTCGAGATCGCGGCCC
GGCTGCGCGACGAGGTCTCCGAGATGAAGAAGGAACTGCGTCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(671-704)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(169-257)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

Type III restriction enzyme, res subunit (ResIII)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.772

97.063

0.551
  uvrB Streptococcus pneumoniae R6

56.772

97.063

0.551
  uvrB Streptococcus pneumoniae D39

56.772

97.063

0.551