Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   RJW53_RS11145 Genome accession   NZ_CP134488
Coordinates   2207175..2207726 (-) Length   183 a.a.
NCBI ID   WP_161945209.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS50     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 2202175..2212726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS11125 (RJW53_11125) - 2203490..2204431 (-) 942 WP_002939863.1 LacI family DNA-binding transcriptional regulator -
  RJW53_RS11130 (RJW53_11130) - 2204796..2205542 (-) 747 WP_023371756.1 amino acid ABC transporter ATP-binding protein -
  RJW53_RS11135 (RJW53_11135) - 2205552..2206211 (-) 660 WP_002938543.1 amino acid ABC transporter permease -
  RJW53_RS11140 (RJW53_11140) - 2206224..2207027 (-) 804 WP_012027948.1 amino acid ABC transporter substrate-binding protein -
  RJW53_RS11145 (RJW53_11145) lytF 2207175..2207726 (-) 552 WP_161945209.1 CHAP domain-containing protein Regulator
  RJW53_RS11150 (RJW53_11150) - 2208052..2209428 (-) 1377 WP_311047949.1 PTS transporter subunit EIIC -
  RJW53_RS11155 (RJW53_11155) - 2209472..2209912 (-) 441 WP_023371765.1 DUF3284 domain-containing protein -
  RJW53_RS11160 (RJW53_11160) - 2209931..2210245 (-) 315 WP_023371767.1 PTS lactose/cellobiose transporter subunit IIA -
  RJW53_RS11165 (RJW53_11165) - 2210247..2210558 (-) 312 WP_014638782.1 PTS sugar transporter subunit IIB -
  RJW53_RS11170 (RJW53_11170) - 2210571..2212565 (-) 1995 WP_024405426.1 transcription antiterminator -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19324.74 Da        Isoelectric Point: 4.7914

>NTDB_id=804146 RJW53_RS11145 WP_161945209.1 2207175..2207726(-) (lytF) [Streptococcus suis strain NLS50]
MSYQMIKKQFKLGLFTALIGNLLWLGMVNVSADDTVISDSPTVSALTKKVEAAKAALATNMVSEVAVEYTANTYPAGQCT
WGAKEMAPWVGNYWGNGGDWAASAAALGYEVGTTPKVGAIAVWTDGGYGHVAYVTDVAANGHIQVKESNYGGVYYPSNVR
GFFDPTTTSEGTVSYIYPPAGVN

Nucleotide


Download         Length: 552 bp        

>NTDB_id=804146 RJW53_RS11145 WP_161945209.1 2207175..2207726(-) (lytF) [Streptococcus suis strain NLS50]
ATGAGTTATCAAATGATAAAAAAACAATTTAAATTGGGACTGTTTACAGCCCTCATAGGAAATCTTTTATGGTTGGGAAT
GGTGAATGTCAGTGCAGATGACACAGTTATAAGCGATAGTCCGACAGTATCAGCGTTAACAAAAAAGGTTGAAGCTGCAA
AGGCTGCTTTGGCTACCAATATGGTGTCAGAGGTTGCTGTGGAATATACGGCTAATACCTATCCAGCTGGTCAGTGTACT
TGGGGTGCCAAAGAAATGGCTCCTTGGGTTGGAAACTATTGGGGTAATGGTGGAGATTGGGCAGCTAGTGCGGCAGCGCT
TGGATATGAAGTGGGAACTACTCCAAAAGTTGGCGCTATTGCTGTATGGACAGATGGAGGCTACGGTCATGTTGCCTATG
TAACAGATGTGGCAGCTAACGGTCACATTCAAGTTAAGGAATCAAACTATGGTGGAGTATACTACCCAAGTAATGTCCGA
GGTTTCTTTGATCCAACAACGACTAGCGAAGGAACAGTCAGCTATATTTACCCACCAGCTGGAGTAAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(71-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

66.667

59.016

0.393
  lytF Streptococcus gordonii str. Challis substr. CH1

66.667

59.016

0.393
  SMU.836 Streptococcus mutans UA159

64.486

58.47

0.377